SMTL ID : 8zpa.1

Crystal structure of a HSA/probe complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

1 x UI8: 7-$l^{3}-oxidanyl-12~{H}-[2,1]benzazaborolo[2,1-a][1,3,2]benzodiazaborinine(Covalent)

UI8.1: 9 residues within 4Å: Chain A: K.205, S.208, F.217, W.220, A.221, L.244, H.248, L.487 Ligands: STE.6 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.220, A:W.220, A:W.220, A:A.221, A:L.244, A:L.487 pi-Stacking: A:W.220, A:W.220

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: H.152, G.195, K.196 No protein-ligand interaction detected (PLIP) EDO.3: 2 residues within 4Å: Chain A: L.28, L.257 No protein-ligand interaction detected (PLIP) EDO.4: 1 residues within 4Å: Chain A: P.474 No protein-ligand interaction detected (PLIP)

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.5: 13 residues within 4Å: Chain A: S.348, V.350, R.354, P.390, L.393, I.394, Y.417, L.436, L.459, L.463, R.491, F.494, S.495 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.393, A:L.393, A:I.394, A:Y.417, A:Y.417, A:L.436, A:L.459, A:L.463, A:F.494, A:F.494 Hydrogen bonds: A:S.348, A:S.348 Salt bridges: A:R.354, A:R.491

1 x STE: STEARIC ACID(Non-covalent)

STE.6: 16 residues within 4Å: Chain A: Y.156, E.159, Q.202, R.224, L.225, R.228, L.244, V.247, H.248, C.251, R.263, L.266, S.293, I.296, A.297 Ligands: UI8.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.156, A:E.159, A:Q.202, A:L.225, A:L.244, A:V.247, A:R.263, A:L.266, A:I.296 Salt bridges: A:R.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, M. et al., Conversion of albumin into a BODIPY-like photosensitizer by a flick reaction, tumor accumulation and photodynamic therapy. Biomaterials (2025)

Release Date

2025-03-05

Peptides

Albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Albumin

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