SMTL ID : 8zpr.1

EcGK filament complexed with proline.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-octamer

Ligands

8 x PRO: PROLINE(Non-covalent)

PRO.1: 10 residues within 4Å: Chain A: S.50, G.51, A.52, I.53, N.134, E.135, D.137, E.143, D.148, N.149 9 PLIP interactions: 7 interactions with chain A, 2 Ligand-Ligand interactions Hydrophobic interactions: A:E.143 Hydrogen bonds: A:G.51, A:A.52, A:I.53, A:N.134, A:N.134, A:N.134, P.1, P.1 PRO.2: 8 residues within 4Å: Chain B: S.50, G.51, A.52, I.53, N.134, D.137, E.143, N.149 8 PLIP interactions: 7 interactions with chain B, 1 Ligand-Ligand interactions Hydrophobic interactions: B:E.143 Hydrogen bonds: B:G.51, B:A.52, B:I.53, B:N.134, B:N.134, P.2 Water bridges: B:A.54 PRO.3: 8 residues within 4Å: Chain C: S.50, G.51, A.52, I.53, N.134, D.137, E.143, N.149 8 PLIP interactions: 7 interactions with chain C, 1 Ligand-Ligand interactions Hydrophobic interactions: C:E.143 Hydrogen bonds: C:G.51, C:A.52, C:I.53, C:N.134, C:N.134, P.3 Water bridges: C:A.54 PRO.4: 10 residues within 4Å: Chain D: S.50, G.51, A.52, I.53, N.134, E.135, D.137, E.143, D.148, N.149 9 PLIP interactions: 7 interactions with chain D, 2 Ligand-Ligand interactions Hydrophobic interactions: D:E.143 Hydrogen bonds: D:G.51, D:A.52, D:I.53, D:N.134, D:N.134, D:N.134, P.4, P.4 PRO.5: 8 residues within 4Å: Chain E: S.50, G.51, A.52, I.53, N.134, D.137, E.143, N.149 9 PLIP interactions: 7 interactions with chain E, 2 Ligand-Ligand interactions Hydrophobic interactions: E:E.143 Hydrogen bonds: E:G.51, E:A.52, E:I.53, E:N.134, E:N.134, E:N.134, P.5, P.5 PRO.6: 9 residues within 4Å: Chain F: S.50, G.51, A.52, I.53, N.134, E.135, D.137, E.143, N.149 7 PLIP interactions: 6 interactions with chain F, 1 Ligand-Ligand interactions Hydrophobic interactions: F:E.143 Hydrogen bonds: F:G.51, F:A.52, F:I.53, F:N.134, F:N.134, P.6 PRO.7: 10 residues within 4Å: Chain G: S.50, G.51, A.52, I.53, N.134, E.135, D.137, E.143, D.148, N.149 7 PLIP interactions: 6 interactions with chain G, 1 Ligand-Ligand interactions Hydrophobic interactions: G:E.143 Hydrogen bonds: G:G.51, G:A.52, G:I.53, G:N.134, G:N.134, P.7 PRO.8: 8 residues within 4Å: Chain H: S.50, G.51, A.52, I.53, N.134, D.137, E.143, N.149 10 PLIP interactions: 8 interactions with chain H, 2 Ligand-Ligand interactions Hydrophobic interactions: H:E.143 Hydrogen bonds: H:G.51, H:A.52, H:I.53, H:N.134, H:N.134, H:N.134, P.8, P.8 Water bridges: H:A.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, T. et al., EcGPR tetramer with catalytic intermediates. To Be Published

Release Date

2025-06-04

Peptides

Glutamate 5-kinase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Glutamate 5-kinase

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