SMTL ID : 8zq3.1

Structure of ORP1L-RAB7A in the presence of GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: D.16, S.17, G.18, V.19, G.20, K.21, T.22, S.23, F.33, N.35, N.125, K.126, D.128, L.129, S.155, A.156, K.157 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:D.16, A:G.18, A:V.19, A:G.20, A:K.21, A:T.22, A:T.22, A:S.23, A:S.23, A:N.35, A:N.125, A:K.126, A:K.126, A:S.155, A:A.156, A:K.157 Salt bridges: A:K.21, A:D.128 pi-Stacking: A:F.33, A:F.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, Q. et al., Structure of GDP-bound Rab7 Q67L in complex with ORP1L. Biochem.Biophys.Res.Commun. (2024)

Release Date

2024-06-26

Peptides

Ras-related protein Rab-7a: A
Oxysterol-binding protein-related protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ras-related protein Rab-7a

Oxysterol-binding protein-related protein 1

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