SMTL ID : 8zse.2 (1 other biounit)

Crystal Structure of SARS CoV-2 Papain-like Protease PLpro-C111S in Complex with GZNL-2002

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.190, C.193, C.225, C.227 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.190, A:C.193, A:C.225, A:C.227 ZN.2: 3 residues within 4Å: Chain A: S.112, L.163, H.273 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.112, A:H.273, H2O.1 ZN.3: 2 residues within 4Å: Chain A: H.90, D.109 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.90, A:D.109 ZN.4: 2 residues within 4Å: Chain A: H.74, H.176 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.74, A:H.176

1 x 01: 2-methyl-5-(4-methylpiperazin-1-yl)-~{N}-(1-quinolin-4-ylcyclopropyl)benzamide

01.5: 11 residues within 4Å: Chain A: L.163, G.164, D.165, E.168, M.209, P.249, Y.265, Y.269, Q.270, Y.274, T.302 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.163, A:D.165, A:P.249, A:Y.265, A:Y.265, A:Y.265, A:Y.269, A:Q.270, A:T.302 Hydrogen bonds: A:D.165, A:D.165, A:Q.270 Salt bridges: A:E.168 pi-Stacking: A:Y.269, A:Y.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, Y. et al., Crystal Structure of SARS CoV-2 Papain-like Protease PLpro-C111S in Complex with GZNL-2002. To Be Published

Release Date

2025-06-11

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Papain-like protease nsp3

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