SMTL ID : 8zu0.1

CryoEM structure of a tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)(Non-covalent)

FAD.1: 28 residues within 4Å: Chain A: G.13, G.14, G.15, H.16, A.17, L.35, T.36, H.37, Q.44, S.46, C.47, K.56, V.125, V.155, F.158, L.159, R.174, S.180, L.183, T.199, G.200, T.201, I.343, Q.370, T.375, G.376, Y.377, R.427 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.14, A:G.14, A:G.15, A:H.16, A:H.16, A:A.17, A:T.36, A:H.37, A:S.46, A:S.46, A:C.47, A:V.125, A:S.180, A:T.199, A:T.375 Salt bridges: A:H.16, A:R.174 pi-Stacking: A:H.37 FAD.2: 27 residues within 4Å: Chain B: G.13, G.14, G.15, H.16, L.35, T.36, H.37, Q.44, S.46, C.47, K.56, V.125, V.155, F.158, L.159, R.174, S.180, L.183, T.199, G.200, T.201, I.343, Q.370, T.375, G.376, Y.377, R.427 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:G.14, B:G.15, B:H.16, B:T.36, B:H.37, B:S.46, B:S.46, B:S.46, B:C.47, B:V.125, B:R.174, B:S.180, B:T.199, B:T.375 Salt bridges: B:H.16, B:R.174 pi-Stacking: B:H.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, W.X. et al., CryoEM structure of a tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA. To Be Published

Release Date

2025-06-18

Peptides

tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG