SMTL ID : 8zu2.1

Crystal Structure of Human Myt1 Kinase domain Bounded with compound 8g

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x GLY: GLYCINE

GLY.1: 0 residues within 4Å: (No contacts) 3 PLIP interactions: 2 Ligand-Ligand interactions, 1 interactions with chain A Water bridges: G.1, G.1 Hydrogen bonds: A:S.260

1 x 01: 2-azanyl-5-[2-(1,4-diazepan-1-yl)pyridin-4-yl]-3-(2,6-dimethyl-3-oxidanyl-phenyl)benzamide

01.2: 20 residues within 4Å: Chain A: L.42, G.43, Y.47, V.50, A.63, V.64, K.65, H.87, V.97, T.113, E.114, L.115, C.116, G.117, A.163, N.164, F.166, G.176, D.177, F.178 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.50, A:A.63, A:K.65, A:T.113, A:F.166, A:F.166 Hydrogen bonds: A:T.113, A:T.113, A:C.116, A:C.116, A:A.163, A:D.177, A:F.178 Water bridges: A:H.87, A:K.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, C. et al., Structure-Based Drug Design of 2-Amino-[1,1'-biphenyl]-3-carboxamide Derivatives as Selective PKMYT1 Inhibitors for the Treatment of CCNE1 -Amplified Breast Cancer. J.Med.Chem. (2024)

Release Date

2024-09-11

Peptides

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase

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