SMTL ID : 8zvv.1

human citrate synthase complexed with citrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

homo-octamer

Ligands

8 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 10 residues within 4Å: Chain A: H.236, N.240, L.271, H.272, H.318, R.327, D.373, F.395, R.399 Chain B: R.419 15 PLIP interactions: 1 interactions with chain B, 14 interactions with chain A Salt bridges: B:R.419, A:H.236, A:H.236, A:H.272, A:H.318, A:H.318, A:R.327, A:R.399 Hydrophobic interactions: A:N.240 Hydrogen bonds: A:H.318, A:R.327, A:R.327 Water bridges: A:V.372, A:R.399, A:R.399 CIT.2: 11 residues within 4Å: Chain A: R.419 Chain B: H.236, N.240, H.272, H.318, R.327, N.371, V.372, D.373, F.395, R.399 17 PLIP interactions: 16 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:N.240 Hydrogen bonds: B:H.318, B:R.327, B:R.327, B:D.373 Water bridges: B:H.318, B:N.371, B:N.371 Salt bridges: B:H.236, B:H.236, B:H.272, B:H.318, B:H.318, B:R.327, B:R.327, B:R.399, A:R.419 CIT.3: 10 residues within 4Å: Chain C: H.236, N.240, L.271, H.272, H.318, R.327, D.373, F.395, R.399 Chain H: R.419 15 PLIP interactions: 14 interactions with chain C, 1 interactions with chain H Hydrophobic interactions: C:N.240, C:F.395 Hydrogen bonds: C:N.240, C:H.318, C:R.327, C:R.327 Water bridges: C:R.399 Salt bridges: C:H.236, C:H.236, C:H.272, C:H.272, C:H.318, C:R.327, C:R.399, H:R.419 CIT.4: 10 residues within 4Å: Chain D: H.236, N.240, H.272, H.318, R.327, N.371, V.372, D.373, F.395, R.399 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:N.240 Hydrogen bonds: D:H.318, D:H.318, D:R.327, D:R.327 Water bridges: D:H.318, D:H.318 Salt bridges: D:H.236, D:H.236, D:H.272, D:H.318, D:R.327, D:R.327, D:R.399 CIT.5: 10 residues within 4Å: Chain E: H.236, N.240, L.271, H.272, H.318, R.327, D.373, F.395, R.399 Chain F: R.419 15 PLIP interactions: 14 interactions with chain E, 1 interactions with chain F Hydrophobic interactions: E:N.240 Hydrogen bonds: E:H.318, E:R.327, E:R.327 Water bridges: E:V.372, E:R.399, E:R.399 Salt bridges: E:H.236, E:H.236, E:H.272, E:H.318, E:H.318, E:R.327, E:R.399, F:R.419 CIT.6: 11 residues within 4Å: Chain E: R.419 Chain F: H.236, N.240, H.272, H.318, R.327, N.371, V.372, D.373, F.395, R.399 17 PLIP interactions: 16 interactions with chain F, 1 interactions with chain E Hydrophobic interactions: F:N.240 Hydrogen bonds: F:H.318, F:R.327, F:R.327, F:D.373 Water bridges: F:H.318, F:N.371, F:N.371 Salt bridges: F:H.236, F:H.236, F:H.272, F:H.318, F:H.318, F:R.327, F:R.327, F:R.399, E:R.419 CIT.7: 9 residues within 4Å: Chain G: H.236, N.240, L.271, H.272, H.318, R.327, D.373, F.395, R.399 14 PLIP interactions: 14 interactions with chain G Hydrophobic interactions: G:N.240, G:F.395 Hydrogen bonds: G:N.240, G:H.318, G:R.327, G:R.327 Water bridges: G:R.399 Salt bridges: G:H.236, G:H.236, G:H.272, G:H.272, G:H.318, G:R.327, G:R.399 CIT.8: 11 residues within 4Å: Chain C: R.419 Chain H: H.236, N.240, H.272, H.318, R.327, N.371, V.372, D.373, F.395, R.399 15 PLIP interactions: 14 interactions with chain H, 1 interactions with chain C Hydrophobic interactions: H:N.240 Hydrogen bonds: H:H.318, H:H.318, H:R.327, H:R.327 Water bridges: H:H.318, H:H.318 Salt bridges: H:H.236, H:H.236, H:H.272, H:H.318, H:R.327, H:R.327, H:R.399, C:R.419

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, L.Y. et al., human citrate synthase complexed with citrate. To Be Published

Release Date

2025-06-18

Peptides

Citrate synthase, mitochondrial: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

Citrate synthase, mitochondrial

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