SMTL ID : 8zvx.1

Crystal structure of snFPITE-n2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

2 x PMS: phenylmethanesulfonic acid(Covalent)

PMS.1: 12 residues within 4Å: Chain A: H.44, S.184, C.185, Q.186, G.187, D.188, S.189, S.208, W.209, G.210, S.217, C.218 No protein-ligand interaction detected (PLIP) PMS.7: 12 residues within 4Å: Chain A: A.214 Chain B: C.185, Q.186, G.187, D.188, S.189, T.207, S.208, G.210, S.217, C.218 Ligands: 1PE.11 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Q.186, A:A.214

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: P.162, H.164, I.211, G.212, Y.222 Chain B: I.165, I.211, G.212 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:N.213, B:G.212 Salt bridges: A:H.164 SO4.3: 2 residues within 4Å: Chain A: A.104, G.105 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.105 SO4.8: 4 residues within 4Å: Chain B: R.152, S.177, D.178, T.179 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.152, B:D.178, B:T.179 Water bridges: B:T.149, B:T.150, B:T.150, B:T.150 SO4.9: 2 residues within 4Å: Chain B: R.9, H.59 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.9

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: T.150, R.152, S.177, D.178, A.179 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.150, A:T.150, A:R.152, A:R.152, A:D.178, A:D.178, A:A.179 Water bridges: A:S.177, A:S.177 GOL.5: 8 residues within 4Å: Chain A: K.38, T.74, V.75, T.76, T.94, M.95, A.96, N.239 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.74, A:V.75, A:T.76, A:N.239 GOL.6: 4 residues within 4Å: Chain A: Q.66, E.67, Q.68, S.69 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.66, A:S.69, A:S.69 GOL.10: 8 residues within 4Å: Chain B: K.38, S.74, V.75, T.76, T.94, M.95, A.96, N.239 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.75, B:T.94 Water bridges: B:T.76

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.11: 12 residues within 4Å: Chain A: G.212, N.213, A.214 Chain B: I.88, G.210, G.212, N.213, P.214, V.215, E.216, S.217 Ligands: PMS.7 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.216, A:A.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, G.X. et al., A Novel Facultative Plasminogen Independent Thrombolytic Enzyme Pool in the Ancient Peanut Worm (Sipunculus nudus). To Be Published

Release Date

2025-04-02

Peptides

snFPITE-n2 A chain: A
snFPITE-n2 B chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

snFPITE-n2 A chain

snFPITE-n2 B chain

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