SMTL ID : 8zyh.1

Crystal structure of a cupin protein (tm1459, I49C-4py/H52A/H54A/C106D mutant) in copper (Cu) substituted form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.07 Å

Oligo State

homo-dimer

Ligands

1 x P6G: HEXAETHYLENE GLYCOL

P6G.1: 8 residues within 4Å: Chain A: K.70, T.81, V.82, E.83, F.86, D.101, T.102 Chain B: R.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.70

3 x CU: COPPER (II) ION

CU.2: 3 residues within 4Å: Chain A: A.58, H.62, H.96 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.62, A:H.96, H2O.3, H2O.3 CU.3: 2 residues within 4Å: Chain A: E.94 Chain B: G.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.94, A:E.94 CU.4: 5 residues within 4Å: Chain B: C.53, A.58, W.60, H.62, H.96 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.62, B:H.96, H2O.7, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morita, Y. et al., Copper center in artificial non-heme metalloenzyme. To Be Published

Release Date

2024-09-04

Peptides

Cupin type-2 domain-containing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cupin type-2 domain-containing protein