SMTL ID : 8zyq.1

Cryo-EM Structure of pimozide-bound hERG Channel

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

1 x 1II: 3-[1-[4,4-bis(4-fluorophenyl)butyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one(Non-covalent)

1II.1: 19 residues within 4Å: Chain A: L.412, S.414, M.435, G.438, S.439, Y.442 Chain B: L.412, S.414, G.438, S.439, Y.442 Chain C: T.413, S.414, Y.442 Chain D: L.412, T.413, M.441, Y.442, F.446 9 PLIP interactions: 4 interactions with chain D, 2 interactions with chain A, 1 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: D:Y.442, D:Y.442, D:Y.442, A:Y.442, A:Y.442, C:T.413, B:Y.442, B:Y.442 pi-Stacking: D:F.446

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miyashita, Y. et al., Improved higher resolution cryo-EM structures reveal the binding modes of hERG channel inhibitors. Structure (2024)

Release Date

2024-09-18

Peptides

Potassium voltage-gated channel subfamily H member 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Potassium voltage-gated channel subfamily H member 2

Related Entries With Identical Sequence