SMTL ID : 966c.1

CRYSTAL STRUCTURE OF FIBROBLAST COLLAGENASE-1 COMPLEXED TO A DIPHENYL-ETHER SULPHONE BASED HYDROXAMIC ACID

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.111, H.115, H.121 Ligands: RS2.6 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.111, A:H.115, A:H.121, H2O.2 ZN.2: 6 residues within 4Å: Chain A: H.61, D.63, S.65, H.76, F.78, H.89 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.61, A:D.63, A:D.63, A:H.76, A:H.89

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 7 residues within 4Å: Chain A: D.68, G.69, P.70, G.71, N.73, D.91, E.94 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.68, A:G.69, A:G.71, A:N.73, A:D.91 CA.4: 5 residues within 4Å: Chain A: D.51, M.53, G.83, G.85, D.87 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.51, A:G.83, A:G.85, A:D.87, H2O.2, H2O.4 CA.5: 5 residues within 4Å: Chain A: T.15, D.17, E.92, E.94, W.96 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.17, A:E.92, A:E.92, H2O.1, H2O.1

1 x RS2: N-HYDROXY-2-[4-(4-PHENOXY-BENZENESULFONYL)-TETRAHYDRO-PYRAN-4-YL]-ACETAMIDE(Non-covalent)

RS2.6: 19 residues within 4Å: Chain A: N.73, L.74, A.75, H.76, A.77, R.107, V.108, H.111, E.112, H.115, H.121, A.127, L.128, Y.130, P.131, S.132, Y.133, T.134 Ligands: ZN.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:H.111, A:Y.133 Hydrogen bonds: A:A.75, A:E.112 Water bridges: A:A.77, A:A.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovejoy, B. et al., Crystal structures of MMP-1 and -13 reveal the structural basis for selectivity of collagenase inhibitors. Nat.Struct.Biol. (1999)

Release Date

1999-08-07

Peptides

MMP-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MMP-1