SMTL ID : 9are.1

Rat GluN1-GluN2B NMDA receptor channel in complex with glycine, glutamate, and EU-1622-A, in open-channel conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x GLY: GLYCINE(Non-covalent)

GLY.1: 9 residues within 4Å: Chain A: F.484, P.516, L.517, T.518, R.523, S.687, S.688, D.732, F.758 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.516, A:T.518, A:S.688 Salt bridges: A:R.523 GLY.3: 9 residues within 4Å: Chain C: F.484, P.516, L.517, T.518, R.523, S.687, S.688, D.732, F.758 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:P.516, C:T.518, C:S.688 Salt bridges: C:R.523

2 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.2: 9 residues within 4Å: Chain B: H.517, S.543, T.545, R.550, G.720, S.721, T.722, Y.762, D.763 11 PLIP interactions: 11 interactions with chain B, Hydrophobic interactions: B:Y.762 Hydrogen bonds: B:T.545, B:T.545, B:S.721, B:T.722, B:T.722, B:D.763, B:D.763, B:D.763 Salt bridges: B:H.517, B:R.550 GLU.4: 9 residues within 4Å: Chain D: H.517, S.543, T.545, R.550, G.720, S.721, T.722, Y.762, D.763 11 PLIP interactions: 11 interactions with chain D, Hydrophobic interactions: D:Y.762 Hydrogen bonds: D:T.545, D:T.545, D:S.721, D:T.722, D:T.722, D:D.763, D:D.763, D:D.763 Salt bridges: D:H.517, D:R.550

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chou, T.H. et al., Molecular mechanism of ligand gating and opening of NMDA receptor. Nature (2024)

Release Date

2024-07-31

Peptides

Glutamate receptor ionotropic, NMDA 1: AC
Glutamate receptor ionotropic, NMDA 2B: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Membrane

We predict this structure to be a membrane protein.
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Glutamate receptor ionotropic, NMDA 1

Glutamate receptor ionotropic, NMDA 2B

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