SMTL ID : 9arv.1

CryoEM structure of AMETA-A3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-10-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 3 residues within 4Å: Chain B: N.362 Chain C: N.362 Ligands: NAG.2 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:N.362, C:N.362 NAG.2: 8 residues within 4Å: Chain C: L.360, N.362 Chain D: N.362, S.364 Chain E: N.362, S.364, V.366 Ligands: NAG.1 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:S.364, D:N.362 NAG.3: 6 residues within 4Å: Chain G: S.364 Chain H: N.362, S.364 Chain I: L.360, N.362 Ligands: NAG.4 5 PLIP interactions: 1 interactions with chain I, 4 interactions with chain H Hydrogen bonds: I:N.362, H:N.362, H:S.364, H:S.364 Hydrophobic interactions: H:N.362 NAG.4: 6 residues within 4Å: Chain I: N.362, S.364 Chain J: L.360, N.362 Ligands: NAG.3, NAG.5 3 PLIP interactions: 2 interactions with chain I, 1 interactions with chain J Hydrophobic interactions: I:N.362 Hydrogen bonds: I:N.362, J:N.362 NAG.5: 6 residues within 4Å: Chain I: S.364 Chain J: N.362, S.364 Chain K: L.360, N.362 Ligands: NAG.4 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:N.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiang, Y. et al., Adaptive multi-epitope targeting and avidity-enhanced nanobody platform for ultrapotent, durable antiviral therapy. Cell (2024)

Release Date

2024-11-06

Peptides

Isoform 1 of Immunoglobulin heavy constant mu: ABCDEGHIJK
Immunoglobulin J chain: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

G
L

H
M

I
N

J
O

K
P

F
J

Isoform 1 of Immunoglobulin heavy constant mu

Immunoglobulin J chain

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