SMTL ID : 9asd.1

VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain C: F.339, N.340 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.339 Hydrogen bonds: C:N.340 NAG.2: 2 residues within 4Å: Chain C: A.349, N.351 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.351

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rosen, L.E. et al., A potent pan-sarbecovirus neutralizing antibody resilient to epitope diversification. Cell (2024)

Release Date

2024-10-16

Peptides

VIR-7229 Fab heavy chain: A
VIR-7229 Fab light chain: B
Spike glycoprotein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
R

VIR-7229 Fab heavy chain

VIR-7229 Fab light chain

Spike glycoprotein

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