SMTL ID : 9at7.1

Crystal structure of SARS-CoV-2 3CL protease in complex with a 2,2-difluoro-5-methylbenzo[1,3]dioxole 2-pyrrolidone inhibitor

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.70 Å
Oligo State
homo-dimer
Ligands
2 x 01: (1R,2S)-2-({N-[({(2S)-1-[(2,2-difluoro-2H-1,3-benzodioxol-5-yl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid
2 x 02: (1S,2S)-2-({N-[({(2S)-1-[(2,2-difluoro-2H-1,3-benzodioxol-5-yl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid
1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Dampalla, C.S. et al., Structure-Guided Design of Potent Coronavirus Inhibitors with a 2-Pyrrolidone Scaffold: Biochemical, Crystallographic, and Virological Studies. J.Med.Chem. (2024)
Release Date
2024-07-10
Peptides
3C-like proteinase nsp5: AB
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B

3C-like proteinase nsp5

Related Entries With Identical Sequence

9asv.1 | 9asw.1 | 9asy.1 | 9asz.1 | 9at0.1 | 9at1.1 | 9at3.1 | 9at4.1 | 9at5.1 | 9at6.1