- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-mer
- Ligands
- 15 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG.16: 1 residues within 4Å:- Chain A: N.265
No protein-ligand interaction detected (PLIP)NAG.17: 2 residues within 4Å:- Chain A: N.314, Q.563
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.314
NAG.18: 3 residues within 4Å:- Chain A: N.692
- Chain B: I.777, Y.779
No protein-ligand interaction detected (PLIP)NAG.19: 1 residues within 4Å:- Chain B: N.45
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.45
NAG.20: 3 residues within 4Å:- Chain B: N.314, P.562, Q.563
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.314, B:P.562
NAG.21: 2 residues within 4Å:- Chain B: N.692
- Chain C: Y.779
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.692
NAG.22: 2 residues within 4Å:- Chain C: Y.12, N.45
No protein-ligand interaction detected (PLIP)NAG.23: 2 residues within 4Å:- Chain C: E.264, N.265
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.265
NAG.24: 2 residues within 4Å:- Chain C: N.314, Q.563
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:N.314
NAG.25: 2 residues within 4Å:- Chain A: Y.779
- Chain C: N.692
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ye, G. et al., Structure of XBB.1.5 spike/Nanosota-3C complex. To Be Published
- Release Date
- 2024-09-18
- Peptides
- Spike glycoprotein: ABC
Nanosota-3C: DEF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
FF
L
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-mer
- Ligands
- 15 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ye, G. et al., Structure of XBB.1.5 spike/Nanosota-3C complex. To Be Published
- Release Date
- 2024-09-18
- Peptides
- Spike glycoprotein: ABC
Nanosota-3C: DEF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
FF
L