SMTL ID : 9aus.2 (1 other biounit)

Crystal structure of loop-closed dumbbell RNA bridged by glycine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

hetero-1-1-mer

Ligands

3 x SO4: SULFATE ION

SO4.1: 3 residues within 4Å: Chain B: P.60, S.61, R.62 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.61, B:R.62 Water bridges: B:S.61, B:R.62 SO4.2: 2 residues within 4Å: Chain B: S.31, R.67 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.67 SO4.3: 4 residues within 4Å: Chain C: G.17, A.18, G.19, A.21 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Radakovic, A. et al., A potential role for RNA aminoacylation prior to its role in peptide synthesis. Proc.Natl.Acad.Sci.USA (2024)

Release Date

2024-09-04

Peptides

Fab BL3-6 heavy chain: A
Fab BL3-6 light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fab BL3-6 heavy chain

Fab BL3-6 light chain

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