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SMTL ID : 9av4.1
Design and application of synthetic 17B-HSD13 substrates to drug discovery, and to reveal preserved catalytic activity of protective human variants
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.09 Å
Oligo State
homo-dimer
Ligands
2 x
NAD
:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
(Non-covalent)
NAD.1:
27 residues within 4Å:
Chain A:
G.44
,
G.46
,
H.47
,
G.48
,
I.49
,
D.68
,
I.69
,
V.93
,
D.94
,
C.95
,
G.96
,
N.121
,
A.122
,
G.123
,
I.144
,
V.171
,
A.172
,
S.173
,
Y.186
,
K.190
,
P.219
,
V.220
,
F.221
,
V.222
,
T.224
,
F.226
Ligands:
01.2
22
PLIP interactions
:
22 interactions with chain A
Hydrophobic interactions:
A:P.219
Hydrogen bonds:
A:G.44
,
A:G.44
,
A:G.46
,
A:I.49
,
A:I.69
,
A:D.94
,
A:C.95
,
A:G.96
,
A:N.121
,
A:Y.186
,
A:K.190
,
A:V.222
,
A:V.222
,
A:T.224
,
A:T.224
Water bridges:
A:H.47
,
A:G.50
,
A:N.70
,
A:N.121
,
A:G.225
Salt bridges:
A:H.47
NAD.3:
27 residues within 4Å:
Chain B:
G.44
,
G.46
,
H.47
,
G.48
,
I.49
,
D.68
,
I.69
,
V.93
,
D.94
,
C.95
,
G.96
,
N.121
,
A.122
,
G.123
,
I.144
,
V.171
,
A.172
,
S.173
,
Y.186
,
K.190
,
P.219
,
V.220
,
F.221
,
V.222
,
T.224
,
F.226
Ligands:
01.4
16
PLIP interactions
:
16 interactions with chain B
Hydrophobic interactions:
B:P.219
Hydrogen bonds:
B:G.44
,
B:G.46
,
B:I.49
,
B:I.69
,
B:D.94
,
B:C.95
,
B:G.96
,
B:N.121
,
B:K.190
,
B:V.222
,
B:V.222
,
B:T.224
Water bridges:
B:G.50
,
B:N.121
Salt bridges:
B:H.47
2 x 01:
4-(3,4-dichlorobenzene-1-sulfonamido)-2-fluorobenzoic acid
01.2:
21 residues within 4Å:
Chain A:
S.173
,
V.174
,
C.175
,
E.178
,
G.179
,
I.180
,
L.183
,
Y.186
,
P.219
,
V.220
,
F.221
,
F.226
,
T.227
,
N.229
,
P.230
,
S.231
,
T.232
,
L.234
,
Y.264
,
L.268
Ligands:
NAD.1
11
PLIP interactions
:
11 interactions with chain A
Hydrophobic interactions:
A:I.180
,
A:Y.264
Hydrogen bonds:
A:S.173
,
A:S.173
,
A:F.221
,
A:S.231
,
A:S.231
,
A:T.232
Halogen bonds:
A:E.178
,
A:G.179
,
A:P.219
01.4:
19 residues within 4Å:
Chain B:
S.173
,
V.174
,
C.175
,
E.178
,
I.180
,
L.183
,
Y.186
,
P.219
,
V.220
,
F.221
,
F.226
,
T.227
,
N.229
,
P.230
,
S.231
,
T.232
,
Y.264
,
L.268
Ligands:
NAD.3
13
PLIP interactions
:
13 interactions with chain B
Hydrophobic interactions:
B:V.174
,
B:I.180
,
B:Y.264
Hydrogen bonds:
B:S.173
,
B:S.173
,
B:Y.186
,
B:F.221
,
B:T.227
,
B:S.231
,
B:S.231
,
B:T.232
Halogen bonds:
B:E.178
,
B:P.219
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Garnsey, M.R. et al., Design and application of synthetic 17B-HSD13 substrates reveals preserved catalytic activity of protective human variants. Nat Commun (2025)
Release Date
2024-11-27
Peptides
Hydroxysteroid 17-beta dehydrogenase 13:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Hydroxysteroid 17-beta dehydrogenase 13
Related Entries With Identical Sequence
8g93.1
|
9av5.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
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Transparent
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