SMTL ID : 9avh.1

Crystal structure of an aryl-alcohol-oxidase from Bjerkandera adusta.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 39 residues within 4Å: Chain A: V.21, G.22, A.23, G.24, N.25, A.26, I.45, E.46, A.47, A.92, K.93, G.94, R.95, V.96, G.99, S.100, S.101, V.103, N.104, F.105, M.106, E.107, N.241, T.242, V.243, S.283, A.284, G.285, G.288, I.292, W.513, H.514, D.547, G.548, H.558, P.559, M.560, I.563 Ligands: ANN.2 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:W.513, A:W.513 Hydrogen bonds: A:A.23, A:A.23, A:N.25, A:A.26, A:A.47, A:G.94, A:S.100, A:N.104, A:F.105, A:E.107, A:E.107, A:V.243, A:V.243, A:G.548, A:M.560 Water bridges: A:G.24, A:G.27, A:K.93, A:K.93, A:K.93, A:S.100, A:S.286, A:A.561 pi-Stacking: A:F.105

1 x ANN: 4-METHOXYBENZOIC ACID(Non-covalent)

ANN.2: 12 residues within 4Å: Chain A: F.105, E.107, P.369, S.370, I.403, S.405, T.409, H.425, I.512, H.514, H.558 Ligands: FAD.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.105, A:E.107, A:I.403, A:I.512 Hydrogen bonds: A:S.405 Salt bridges: A:H.514, A:H.558 pi-Stacking: A:F.105

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: I.414, P.415, P.416 No protein-ligand interaction detected (PLIP) GOL.4: 4 residues within 4Å: Chain A: Y.76, T.77, T.78, V.79 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.77 Water bridges: A:V.79 GOL.5: 6 residues within 4Å: Chain A: A.32, R.33, E.36, P.165, A.224, R.232 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.32, A:E.36, A:A.224, A:R.232, A:R.232 GOL.6: 4 residues within 4Å: Chain A: G.53, I.54, D.55, S.56 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.53, A:D.55, A:D.55, A:S.56, A:S.56 GOL.7: 7 residues within 4Å: Chain A: G.61, Y.340, I.343, P.364, A.367, S.368, Q.407 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.364, A:S.368, A:Q.407 Water bridges: A:G.61, A:G.61, A:Q.407

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 3 residues within 4Å: Chain A: Q.333, V.334, E.485 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.333, A:V.334 SO4.9: 5 residues within 4Å: Chain A: N.132, Y.136, R.569, L.573, Q.576 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.132, A:Q.576 Water bridges: A:Q.135, A:Q.135 Salt bridges: A:R.569 SO4.10: 3 residues within 4Å: Chain A: T.436, R.438, Q.453 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.438, A:R.438 Salt bridges: A:R.438 SO4.11: 1 residues within 4Å: Chain A: R.347 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.347 SO4.12: 4 residues within 4Å: Chain A: R.472, R.487, D.495, D.496 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.496 Water bridges: A:R.472 Salt bridges: A:R.487 SO4.13: 3 residues within 4Å: Chain A: S.477, S.478, P.479 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.478

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Serrano, A. et al., Unveiling the kinetic versatility of aryl-alcohol oxidases with different electron acceptors. Front Bioeng Biotechnol (2024)

Release Date

2025-01-22

Peptides

Aryl Alcohol Oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aryl Alcohol Oxidase