SMTL ID : 9avj.1

PS3 F1 ATPase Wild type

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

5 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 13 residues within 4Å: Chain A: R.146, Q.147, T.148, G.149, K.150, T.151, S.152, D.236, R.329, Q.397, L.399 Chain D: Y.363 Ligands: MG.2 12 PLIP interactions: 10 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:R.146, A:Q.147, A:Q.147, A:G.149, A:K.150, A:T.151, A:T.151, A:S.152, A:R.329, A:Q.397, D:L.353, D:Y.363 ANP.3: 11 residues within 4Å: Chain B: R.145, Q.146, T.147, G.148, K.149, T.150, S.151, E.294, R.328, P.329 Ligands: MG.4 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:Q.146, B:T.147, B:G.148, B:K.149, B:K.149, B:T.150, B:T.150, B:S.151, B:S.151, B:S.151, B:E.294, B:R.328 ANP.5: 13 residues within 4Å: Chain C: Q.147, T.148, G.149, K.150, T.151, S.152, Q.175, D.236, R.329, Q.397, D.398, L.399 Ligands: MG.6 12 PLIP interactions: 11 interactions with chain C, 1 interactions with chain F Hydrogen bonds: C:Q.147, C:Q.147, C:T.148, C:G.149, C:K.150, C:T.151, C:S.152, C:S.152, C:Q.175, C:D.236, C:Q.397, F:R.368 ANP.7: 16 residues within 4Å: Chain C: S.339, R.340 Chain D: G.158, G.160, V.161, G.162, K.163, T.164, V.165, E.189, R.190, N.252, Y.340, F.419, T.420 Ligands: MG.8 18 PLIP interactions: 16 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:G.158, D:G.160, D:V.161, D:G.162, D:K.163, D:K.163, D:T.164, D:T.164, D:V.165, D:E.189, D:E.189, D:R.190, D:N.252, C:S.339 pi-Stacking: D:Y.340, D:Y.340, D:F.419 Salt bridges: C:R.340 ANP.9: 13 residues within 4Å: Chain B: S.310, V.337, R.339 Chain F: G.161, V.162, G.163, K.164, T.165, V.166, R.191, Y.341, A.417 Ligands: MG.10 15 PLIP interactions: 13 interactions with chain F, 2 interactions with chain B Hydrogen bonds: F:V.162, F:G.163, F:K.164, F:K.164, F:T.165, F:T.165, F:V.166, F:R.191, F:R.191, F:N.253, F:Y.341, B:R.339 pi-Stacking: F:Y.341, F:Y.341 Salt bridges: B:R.339

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.151 Ligands: ANP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.151 MG.4: 2 residues within 4Å: Chain B: T.150 Ligands: ANP.3 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain C: T.151 Ligands: ANP.5 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.151 MG.8: 4 residues within 4Å: Chain D: T.164, E.189, R.190 Ligands: ANP.7 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:T.164, D:E.189 MG.10: 3 residues within 4Å: Chain F: T.165, R.191 Ligands: ANP.9 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:T.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Furlong, E.J. et al., The molecular structure of an axle-less F 1 -ATPase. Biochim Biophys Acta Bioenerg (2024)

Release Date

2024-10-30

Peptides

ATP synthase subunit alpha: A
ATP synthase subunit alpha: B
ATP synthase subunit alpha: C
ATP synthase subunit beta: D
ATP synthase subunit beta: E
ATP synthase subunit beta: F
ATP synthase gamma chain: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

ATP synthase subunit alpha

ATP synthase subunit alpha

ATP synthase subunit alpha

ATP synthase subunit beta

ATP synthase subunit beta

ATP synthase subunit beta

ATP synthase gamma chain

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