- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.42 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x 01: N-[3-fluoro-4-({7-[(3-fluoropyridin-2-yl)oxy]-4-methyl-2-oxo-2H-1-benzopyran-3-yl}methyl)pyridin-2-yl]-N'-methylsulfuric diamide
01.1: 24 residues within 4Å:- Chain A: L.80, L.83, V.92, G.93, F.94, I.106, M.108, H.153, R.154, D.155, C.172, D.173, F.174, G.175, V.176, S.177, L.180, I.181, M.184, R.199
- Chain B: G.217, C.218, R.219
- Ligands: EDO.6
16 PLIP interactions:15 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:L.80, A:I.106, A:F.174, A:V.176, A:L.180, A:L.180, A:I.181
- Hydrogen bonds: A:R.154, A:D.173, A:V.176, A:S.177, A:R.199, B:R.219
- Water bridges: A:M.184
- Halogen bonds: A:L.180, A:I.181
01.7: 22 residues within 4Å:- Chain C: L.83, V.92, G.93, F.94, I.106, M.108, H.153, R.154, D.155, C.172, D.173, F.174, G.175, V.176, S.177, L.180, I.181, M.184, M.195
- Chain D: G.217, C.218, R.219
10 PLIP interactions:8 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:V.92, C:F.174, C:V.176, C:L.180, C:I.181
- Hydrogen bonds: C:D.173, C:V.176, C:S.177, D:G.217, D:R.219
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
ANP.3: 22 residues within 4Å:- Chain A: L.39, G.40, A.41, G.42, G.45, V.47, A.60, K.62, M.108, E.109, H.110, M.111, S.115, D.117, Q.118, D.155, K.157, S.159, N.160, L.162, D.173
- Ligands: MG.2
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:K.62, A:E.109, A:M.111, A:S.115, A:S.115, A:S.115, A:D.155, A:K.157, A:S.159, A:N.160
- Salt bridges: A:K.62
ANP.5: 20 residues within 4Å:- Chain B: I.20, G.21, G.23, S.24, F.25, G.26, V.28, A.38, K.40, L.71, T.86, Q.87, W.88, C.89, D.133, K.135, N.138, F.140, D.151
- Ligands: MG.4
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:G.23, B:S.24, B:F.25, B:K.40, B:K.40, B:T.86, B:Q.87, B:C.89, B:K.135, B:N.138
- Salt bridges: B:K.40
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.8: 5 residues within 4Å:- Chain C: D.155, K.157, S.159, N.160, D.173
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:D.155, C:K.157, C:S.159, C:N.160, C:D.173
GOL.9: 5 residues within 4Å:- Chain D: A.38, Q.87, W.88, C.89, F.140
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Q.87, D:C.89, D:C.89
GOL.10: 6 residues within 4Å:- Chain B: W.7, R.63, R.66
- Chain D: W.7, R.63, R.66
7 PLIP interactions:3 interactions with chain B, 4 interactions with chain D- Hydrogen bonds: B:R.63, B:R.63, B:R.66, D:R.63, D:R.63, D:R.66, D:R.66
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ryan, M.B. et al., The Pan-RAF-MEK Nondegrading Molecular Glue NST-628 Is a Potent and Brain-Penetrant Inhibitor of the RAS-MAPK Pathway with Activity across Diverse RAS- and RAF-Driven Cancers. Cancer Discov (2024)
- Release Date
- 2024-04-17
- Peptides
- Dual specificity mitogen-activated protein kinase kinase 1: AC
Serine/threonine-protein kinase A-Raf: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.42 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x 01: N-[3-fluoro-4-({7-[(3-fluoropyridin-2-yl)oxy]-4-methyl-2-oxo-2H-1-benzopyran-3-yl}methyl)pyridin-2-yl]-N'-methylsulfuric diamide
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ryan, M.B. et al., The Pan-RAF-MEK Nondegrading Molecular Glue NST-628 Is a Potent and Brain-Penetrant Inhibitor of the RAS-MAPK Pathway with Activity across Diverse RAS- and RAF-Driven Cancers. Cancer Discov (2024)
- Release Date
- 2024-04-17
- Peptides
- Dual specificity mitogen-activated protein kinase kinase 1: AC
Serine/threonine-protein kinase A-Raf: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D