SMTL ID : 9az3.1

Cryo-EM reveals molecular mechanisms underlying the inhibitory effect of netrin-4 on laminin matrix formation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Non-functional Binders)

NAG.1: 1 residues within 4Å: Chain A: N.24 No protein-ligand interaction detected (PLIP) NAG.2: 4 residues within 4Å: Chain A: S.95, N.98, W.136 Ligands: NAG.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.98 Hydrogen bonds: A:S.95, A:S.95 NAG.3: 1 residues within 4Å: Ligands: NAG.2 No protein-ligand interaction detected (PLIP) NAG.4: 3 residues within 4Å: Chain B: N.121, S.123 Ligands: NAG.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.123 NAG.5: 2 residues within 4Å: Chain B: N.14 Ligands: NAG.7 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.14 NAG.6: 1 residues within 4Å: Ligands: NAG.4 No protein-ligand interaction detected (PLIP) NAG.7: 1 residues within 4Å: Ligands: NAG.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kulczyk, A.W. et al., Cryo-EM reveals molecular mechanisms underlying the inhibitory effect of netrin-4 on laminin matrix formation. Nat Commun (2025)

Release Date

2025-08-20

Peptides

Laminin subunit gamma-1: A
Netrin-4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
N

Laminin subunit gamma-1

Netrin-4