SMTL ID : 9b25.1 (1 other biounit)

Crystal Structure of the ER-alpha Ligand-binding Domain (L372S, L536S) in complex with NA98

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

2 x 01: (1r,4r)-N-[4-(4-{[6-hydroxy-2-(4-hydroxyphenyl)-1-benzothiophen-3-yl]oxy}phenoxy)butyl]-4-(trifluoromethyl)cyclohexane-1-carboxamide

01.1: 28 residues within 4Å: Chain A: M.47, L.50, T.51, L.53, A.54, D.55, E.57, L.58, E.84, W.87, L.88, L.91, M.92, L.95, R.98, F.108, M.125, I.128, L.132, G.225, H.228, L.229, V.238, P.239, Y.241, L.244, L.245, L.248 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.50, A:A.54, A:A.54, A:W.87, A:W.87, A:L.91, A:I.128, A:L.229, A:L.244, A:L.245 Hydrogen bonds: A:L.91, A:R.98, A:G.225, A:H.228 Water bridges: A:K.233 pi-Stacking: A:F.108, A:F.108 01.2: 28 residues within 4Å: Chain B: M.47, L.50, T.51, L.53, A.54, E.57, L.58, I.62, V.80, L.83, E.84, W.87, L.88, L.91, M.92, L.95, R.98, F.108, M.125, I.128, G.225, H.228, L.229, C.234, V.237, V.238, Y.241, L.244 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:L.50, B:A.54, B:L.58, B:W.87, B:W.87, B:W.87, B:W.87, B:L.95, B:L.229, B:L.229, B:V.238, B:Y.241 Hydrogen bonds: B:E.57, B:R.98, B:H.228, B:V.238 Water bridges: B:R.98 pi-Stacking: B:F.108, B:F.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nwachukwu, J.C. et al., Crystal Structure of the ER-alpha Ligand-binding Domain (L372S, L536S) in complex with NA98. To Be Published

Release Date

2025-08-27

Peptides

Estrogen receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Estrogen receptor

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