SMTL ID : 9b2m.1

Hemagglutinin H1 New Caledonia 1999 in complex with monoclonal antibody Fab 43_S0008

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-mer

Ligands

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 2 residues within 4Å: Chain A: K.39, N.40 Ligand excluded by PLIP NAG.2: 7 residues within 4Å: Chain A: N.81, E.83, E.103, N.104, C.107, C.152, S.153 Ligand excluded by PLIP NAG.3: 3 residues within 4Å: Chain A: P.141, N.142, K.179 Ligand excluded by PLIP NAG.4: 6 residues within 4Å: Chain A: S.53, H.54, N.55, N.303 Chain C: D.73, E.74 Ligand excluded by PLIP NAG.5: 1 residues within 4Å: Chain A: N.71 Ligand excluded by PLIP NAG.6: 2 residues within 4Å: Chain E: K.39, N.40 Ligand excluded by PLIP NAG.7: 7 residues within 4Å: Chain E: N.81, E.83, E.103, N.104, C.107, C.152, S.153 Ligand excluded by PLIP NAG.8: 3 residues within 4Å: Chain E: P.141, N.142, K.179 Ligand excluded by PLIP NAG.9: 6 residues within 4Å: Chain E: S.53, H.54, N.55, N.303 Chain G: D.73, E.74 Ligand excluded by PLIP NAG.10: 1 residues within 4Å: Chain E: N.71 Ligand excluded by PLIP NAG.11: 2 residues within 4Å: Chain I: K.39, N.40 Ligand excluded by PLIP NAG.12: 7 residues within 4Å: Chain I: N.81, E.83, E.103, N.104, C.107, C.152, S.153 Ligand excluded by PLIP NAG.13: 3 residues within 4Å: Chain I: P.141, N.142, K.179 Ligand excluded by PLIP NAG.14: 6 residues within 4Å: Chain I: S.53, H.54, N.55, N.303 Chain K: D.73, E.74 Ligand excluded by PLIP NAG.15: 1 residues within 4Å: Chain I: N.71 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ataca, S. et al., Modulating the immunodominance hierarchy of immunoglobulin germline-encoded structural motifs targeting the influenza hemagglutinin stem. Cell Rep (2024)

Release Date

2024-12-11

Peptides

Hemagglutinin HA1 chain: AEI
Hemagglutinin HA2 chain: BFJ
Heavy chain monoclonal antibody Fab 3_S0008: CGK
Light chain monoclonal antibody Fab 3_S0008: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

E
A

I
G

B
D

F
B

J
I

C
H

G
E

K
J

D
L

H
F

L
K

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

Heavy chain monoclonal antibody Fab 3_S0008

Light chain monoclonal antibody Fab 3_S0008