SMTL ID : 9b3c.1

type 2 KD-mxyl filament of miniature tau macrocycle derived from 4R tauopathic fold

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-15-mer

Ligands

15 x GLY- SER- VAL- GLN- ILE- VAL- TYR: GLY-SER-VAL-GLN-ILE-VAL-TYR

GLY-SER-VAL-GLN-ILE-VAL-TYR.1: 11 residues within 4Å: Chain A: G.11, G.12, V.14, I.16 Ligands: GLY-SER-VAL-GLN-ILE-VAL-TYR.2, GLY-SER-VAL-GLN-ILE-VAL-TYR.2, GLY-SER-VAL-GLN-ILE-VAL-TYR.2, GLY-SER-VAL-GLN-ILE-VAL-TYR.2, GLY-SER-VAL-GLN-ILE-VAL-TYR.2, GLY-SER-VAL-GLN-ILE-VAL-TYR.2, GLY-SER-VAL-GLN-ILE-VAL-TYR.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.14 Hydrogen bonds: A:G.12 GLY-SER-VAL-GLN-ILE-VAL-TYR.2: 21 residues within 4Å: Chain A: G.12, S.13, V.14 Chain B: G.11, G.12, V.14, I.16 Ligands: GLY-SER-VAL-GLN-ILE-VAL-TYR.1, GLY-SER-VAL-GLN-ILE-VAL-TYR.1, GLY-SER-VAL-GLN-ILE-VAL-TYR.1, GLY-SER-VAL-GLN-ILE-VAL-TYR.1, GLY-SER-VAL-GLN-ILE-VAL-TYR.1, GLY-SER-VAL-GLN-ILE-VAL-TYR.1, GLY-SER-VAL-GLN-ILE-VAL-TYR.1, GLY-SER-VAL-GLN-ILE-VAL-TYR.3, GLY-SER-VAL-GLN-ILE-VAL-TYR.3, GLY-SER-VAL-GLN-ILE-VAL-TYR.3, GLY-SER-VAL-GLN-ILE-VAL-TYR.3, GLY-SER-VAL-GLN-ILE-VAL-TYR.3, GLY-SER-VAL-GLN-ILE-VAL-TYR.3, GLY-SER-VAL-GLN-ILE-VAL-TYR.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.12 GLY-SER-VAL-GLN-ILE-VAL-TYR.3: 21 residues within 4Å: Chain B: G.12, S.13, V.14 Chain C: G.11, G.12, V.14, I.16 Ligands: GLY-SER-VAL-GLN-ILE-VAL-TYR.2, GLY-SER-VAL-GLN-ILE-VAL-TYR.2, GLY-SER-VAL-GLN-ILE-VAL-TYR.2, GLY-SER-VAL-GLN-ILE-VAL-TYR.2, GLY-SER-VAL-GLN-ILE-VAL-TYR.2, GLY-SER-VAL-GLN-ILE-VAL-TYR.2, GLY-SER-VAL-GLN-ILE-VAL-TYR.2, GLY-SER-VAL-GLN-ILE-VAL-TYR.4, GLY-SER-VAL-GLN-ILE-VAL-TYR.4, GLY-SER-VAL-GLN-ILE-VAL-TYR.4, GLY-SER-VAL-GLN-ILE-VAL-TYR.4, GLY-SER-VAL-GLN-ILE-VAL-TYR.4, GLY-SER-VAL-GLN-ILE-VAL-TYR.4, GLY-SER-VAL-GLN-ILE-VAL-TYR.4 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.12 GLY-SER-VAL-GLN-ILE-VAL-TYR.4: 21 residues within 4Å: Chain C: G.12, S.13, V.14 Chain D: G.11, G.12, V.14, I.16 Ligands: GLY-SER-VAL-GLN-ILE-VAL-TYR.3, GLY-SER-VAL-GLN-ILE-VAL-TYR.3, GLY-SER-VAL-GLN-ILE-VAL-TYR.3, GLY-SER-VAL-GLN-ILE-VAL-TYR.3, GLY-SER-VAL-GLN-ILE-VAL-TYR.3, GLY-SER-VAL-GLN-ILE-VAL-TYR.3, GLY-SER-VAL-GLN-ILE-VAL-TYR.3, GLY-SER-VAL-GLN-ILE-VAL-TYR.13, GLY-SER-VAL-GLN-ILE-VAL-TYR.13, GLY-SER-VAL-GLN-ILE-VAL-TYR.13, GLY-SER-VAL-GLN-ILE-VAL-TYR.13, GLY-SER-VAL-GLN-ILE-VAL-TYR.13, GLY-SER-VAL-GLN-ILE-VAL-TYR.13, GLY-SER-VAL-GLN-ILE-VAL-TYR.13 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:G.12 GLY-SER-VAL-GLN-ILE-VAL-TYR.5: 11 residues within 4Å: Chain E: G.11, G.12, V.14, I.16 Ligands: GLY-SER-VAL-GLN-ILE-VAL-TYR.6, GLY-SER-VAL-GLN-ILE-VAL-TYR.6, GLY-SER-VAL-GLN-ILE-VAL-TYR.6, GLY-SER-VAL-GLN-ILE-VAL-TYR.6, GLY-SER-VAL-GLN-ILE-VAL-TYR.6, GLY-SER-VAL-GLN-ILE-VAL-TYR.6, GLY-SER-VAL-GLN-ILE-VAL-TYR.6 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:V.14 Hydrogen bonds: E:G.12 GLY-SER-VAL-GLN-ILE-VAL-TYR.6: 20 residues within 4Å: Chain E: S.13, V.14 Chain F: G.11, G.12, V.14, I.16 Ligands: GLY-SER-VAL-GLN-ILE-VAL-TYR.5, GLY-SER-VAL-GLN-ILE-VAL-TYR.5, GLY-SER-VAL-GLN-ILE-VAL-TYR.5, GLY-SER-VAL-GLN-ILE-VAL-TYR.5, GLY-SER-VAL-GLN-ILE-VAL-TYR.5, GLY-SER-VAL-GLN-ILE-VAL-TYR.5, GLY-SER-VAL-GLN-ILE-VAL-TYR.5, GLY-SER-VAL-GLN-ILE-VAL-TYR.7, GLY-SER-VAL-GLN-ILE-VAL-TYR.7, GLY-SER-VAL-GLN-ILE-VAL-TYR.7, GLY-SER-VAL-GLN-ILE-VAL-TYR.7, GLY-SER-VAL-GLN-ILE-VAL-TYR.7, GLY-SER-VAL-GLN-ILE-VAL-TYR.7, GLY-SER-VAL-GLN-ILE-VAL-TYR.7 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:G.12 GLY-SER-VAL-GLN-ILE-VAL-TYR.7: 20 residues within 4Å: Chain F: S.13, V.14 Chain G: G.11, G.12, V.14, I.16 Ligands: GLY-SER-VAL-GLN-ILE-VAL-TYR.6, GLY-SER-VAL-GLN-ILE-VAL-TYR.6, GLY-SER-VAL-GLN-ILE-VAL-TYR.6, GLY-SER-VAL-GLN-ILE-VAL-TYR.6, GLY-SER-VAL-GLN-ILE-VAL-TYR.6, GLY-SER-VAL-GLN-ILE-VAL-TYR.6, GLY-SER-VAL-GLN-ILE-VAL-TYR.6, GLY-SER-VAL-GLN-ILE-VAL-TYR.8, GLY-SER-VAL-GLN-ILE-VAL-TYR.8, GLY-SER-VAL-GLN-ILE-VAL-TYR.8, GLY-SER-VAL-GLN-ILE-VAL-TYR.8, GLY-SER-VAL-GLN-ILE-VAL-TYR.8, GLY-SER-VAL-GLN-ILE-VAL-TYR.8, GLY-SER-VAL-GLN-ILE-VAL-TYR.8 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:G.12 GLY-SER-VAL-GLN-ILE-VAL-TYR.8: 20 residues within 4Å: Chain G: S.13, V.14 Chain H: G.11, G.12, V.14, I.16 Ligands: GLY-SER-VAL-GLN-ILE-VAL-TYR.7, GLY-SER-VAL-GLN-ILE-VAL-TYR.7, GLY-SER-VAL-GLN-ILE-VAL-TYR.7, GLY-SER-VAL-GLN-ILE-VAL-TYR.7, GLY-SER-VAL-GLN-ILE-VAL-TYR.7, GLY-SER-VAL-GLN-ILE-VAL-TYR.7, GLY-SER-VAL-GLN-ILE-VAL-TYR.7, GLY-SER-VAL-GLN-ILE-VAL-TYR.14, GLY-SER-VAL-GLN-ILE-VAL-TYR.14, GLY-SER-VAL-GLN-ILE-VAL-TYR.14, GLY-SER-VAL-GLN-ILE-VAL-TYR.14, GLY-SER-VAL-GLN-ILE-VAL-TYR.14, GLY-SER-VAL-GLN-ILE-VAL-TYR.14, GLY-SER-VAL-GLN-ILE-VAL-TYR.14 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:G.12 GLY-SER-VAL-GLN-ILE-VAL-TYR.9: 11 residues within 4Å: Chain I: G.11, G.12, V.14, I.16 Ligands: GLY-SER-VAL-GLN-ILE-VAL-TYR.10, GLY-SER-VAL-GLN-ILE-VAL-TYR.10, GLY-SER-VAL-GLN-ILE-VAL-TYR.10, GLY-SER-VAL-GLN-ILE-VAL-TYR.10, GLY-SER-VAL-GLN-ILE-VAL-TYR.10, GLY-SER-VAL-GLN-ILE-VAL-TYR.10, GLY-SER-VAL-GLN-ILE-VAL-TYR.10 2 PLIP interactions: 2 interactions with chain I Hydrophobic interactions: I:V.14 Hydrogen bonds: I:G.12 GLY-SER-VAL-GLN-ILE-VAL-TYR.10: 20 residues within 4Å: Chain I: S.13, V.14 Chain J: G.11, G.12, V.14, I.16 Ligands: GLY-SER-VAL-GLN-ILE-VAL-TYR.9, GLY-SER-VAL-GLN-ILE-VAL-TYR.9, GLY-SER-VAL-GLN-ILE-VAL-TYR.9, GLY-SER-VAL-GLN-ILE-VAL-TYR.9, GLY-SER-VAL-GLN-ILE-VAL-TYR.9, GLY-SER-VAL-GLN-ILE-VAL-TYR.9, GLY-SER-VAL-GLN-ILE-VAL-TYR.9, GLY-SER-VAL-GLN-ILE-VAL-TYR.11, GLY-SER-VAL-GLN-ILE-VAL-TYR.11, GLY-SER-VAL-GLN-ILE-VAL-TYR.11, GLY-SER-VAL-GLN-ILE-VAL-TYR.11, GLY-SER-VAL-GLN-ILE-VAL-TYR.11, GLY-SER-VAL-GLN-ILE-VAL-TYR.11, GLY-SER-VAL-GLN-ILE-VAL-TYR.11 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:G.12 GLY-SER-VAL-GLN-ILE-VAL-TYR.11: 20 residues within 4Å: Chain J: S.13, V.14 Chain K: G.11, G.12, V.14, I.16 Ligands: GLY-SER-VAL-GLN-ILE-VAL-TYR.10, GLY-SER-VAL-GLN-ILE-VAL-TYR.10, GLY-SER-VAL-GLN-ILE-VAL-TYR.10, GLY-SER-VAL-GLN-ILE-VAL-TYR.10, GLY-SER-VAL-GLN-ILE-VAL-TYR.10, GLY-SER-VAL-GLN-ILE-VAL-TYR.10, GLY-SER-VAL-GLN-ILE-VAL-TYR.10, GLY-SER-VAL-GLN-ILE-VAL-TYR.12, GLY-SER-VAL-GLN-ILE-VAL-TYR.12, GLY-SER-VAL-GLN-ILE-VAL-TYR.12, GLY-SER-VAL-GLN-ILE-VAL-TYR.12, GLY-SER-VAL-GLN-ILE-VAL-TYR.12, GLY-SER-VAL-GLN-ILE-VAL-TYR.12, GLY-SER-VAL-GLN-ILE-VAL-TYR.12 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:G.12 GLY-SER-VAL-GLN-ILE-VAL-TYR.12: 20 residues within 4Å: Chain K: S.13, V.14 Chain L: G.11, G.12, V.14, I.16 Ligands: GLY-SER-VAL-GLN-ILE-VAL-TYR.11, GLY-SER-VAL-GLN-ILE-VAL-TYR.11, GLY-SER-VAL-GLN-ILE-VAL-TYR.11, GLY-SER-VAL-GLN-ILE-VAL-TYR.11, GLY-SER-VAL-GLN-ILE-VAL-TYR.11, GLY-SER-VAL-GLN-ILE-VAL-TYR.11, GLY-SER-VAL-GLN-ILE-VAL-TYR.11, GLY-SER-VAL-GLN-ILE-VAL-TYR.15, GLY-SER-VAL-GLN-ILE-VAL-TYR.15, GLY-SER-VAL-GLN-ILE-VAL-TYR.15, GLY-SER-VAL-GLN-ILE-VAL-TYR.15, GLY-SER-VAL-GLN-ILE-VAL-TYR.15, GLY-SER-VAL-GLN-ILE-VAL-TYR.15, GLY-SER-VAL-GLN-ILE-VAL-TYR.15 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:G.12 GLY-SER-VAL-GLN-ILE-VAL-TYR.13: 13 residues within 4Å: Chain D: S.13, V.14 Chain M: G.11, G.12, V.14, I.16 Ligands: GLY-SER-VAL-GLN-ILE-VAL-TYR.4, GLY-SER-VAL-GLN-ILE-VAL-TYR.4, GLY-SER-VAL-GLN-ILE-VAL-TYR.4, GLY-SER-VAL-GLN-ILE-VAL-TYR.4, GLY-SER-VAL-GLN-ILE-VAL-TYR.4, GLY-SER-VAL-GLN-ILE-VAL-TYR.4, GLY-SER-VAL-GLN-ILE-VAL-TYR.4 1 PLIP interactions: 1 interactions with chain M Hydrogen bonds: M:G.12 GLY-SER-VAL-GLN-ILE-VAL-TYR.14: 13 residues within 4Å: Chain H: S.13, V.14 Chain N: G.11, G.12, V.14, I.16 Ligands: GLY-SER-VAL-GLN-ILE-VAL-TYR.8, GLY-SER-VAL-GLN-ILE-VAL-TYR.8, GLY-SER-VAL-GLN-ILE-VAL-TYR.8, GLY-SER-VAL-GLN-ILE-VAL-TYR.8, GLY-SER-VAL-GLN-ILE-VAL-TYR.8, GLY-SER-VAL-GLN-ILE-VAL-TYR.8, GLY-SER-VAL-GLN-ILE-VAL-TYR.8 1 PLIP interactions: 1 interactions with chain N Hydrogen bonds: N:G.12 GLY-SER-VAL-GLN-ILE-VAL-TYR.15: 13 residues within 4Å: Chain L: S.13, V.14 Chain O: G.11, G.12, V.14, I.16 Ligands: GLY-SER-VAL-GLN-ILE-VAL-TYR.12, GLY-SER-VAL-GLN-ILE-VAL-TYR.12, GLY-SER-VAL-GLN-ILE-VAL-TYR.12, GLY-SER-VAL-GLN-ILE-VAL-TYR.12, GLY-SER-VAL-GLN-ILE-VAL-TYR.12, GLY-SER-VAL-GLN-ILE-VAL-TYR.12, GLY-SER-VAL-GLN-ILE-VAL-TYR.12 1 PLIP interactions: 1 interactions with chain O Hydrogen bonds: O:G.12

15 x NH2: AMINO GROUP

NH2.16: 5 residues within 4Å: Chain A: C.22 Chain B: X.1, V.21, C.22 Chain J: V.21 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.21 NH2.18: 5 residues within 4Å: Chain B: C.22 Chain C: X.1, V.21, C.22 Chain K: V.21 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:V.21 NH2.20: 5 residues within 4Å: Chain C: C.22 Chain D: X.1, V.21, C.22 Chain L: V.21 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:V.21 NH2.22: 5 residues within 4Å: Chain D: C.22 Chain M: X.1, V.21, C.22 Chain O: V.21 1 PLIP interactions: 1 interactions with chain M Hydrogen bonds: M:V.21 NH2.24: 5 residues within 4Å: Chain A: V.21 Chain E: C.22 Chain F: X.1, V.21, C.22 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:V.21 NH2.26: 5 residues within 4Å: Chain B: V.21 Chain F: C.22 Chain G: X.1, V.21, C.22 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:V.21 NH2.28: 5 residues within 4Å: Chain C: V.21 Chain G: C.22 Chain H: X.1, V.21, C.22 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:V.21 NH2.30: 5 residues within 4Å: Chain D: V.21 Chain H: C.22 Chain N: X.1, V.21, C.22 1 PLIP interactions: 1 interactions with chain N Hydrogen bonds: N:V.21 NH2.32: 5 residues within 4Å: Chain E: V.21 Chain I: C.22 Chain J: X.1, V.21, C.22 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:V.21 NH2.34: 5 residues within 4Å: Chain F: V.21 Chain J: C.22 Chain K: X.1, V.21, C.22 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:V.21 NH2.36: 5 residues within 4Å: Chain G: V.21 Chain K: C.22 Chain L: X.1, V.21, C.22 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:V.21 NH2.38: 5 residues within 4Å: Chain H: V.21 Chain L: C.22 Chain O: X.1, V.21, C.22 1 PLIP interactions: 1 interactions with chain O Hydrogen bonds: O:V.21 NH2.40: 1 residues within 4Å: Chain M: C.22 No protein-ligand interaction detected (PLIP) NH2.42: 2 residues within 4Å: Chain M: V.21 Chain N: C.22 No protein-ligand interaction detected (PLIP) NH2.44: 2 residues within 4Å: Chain N: V.21 Chain O: C.22 No protein-ligand interaction detected (PLIP)

15 x 8VH: 1,3-dimethylbenzene

8VH.17: 7 residues within 4Å: Chain A: C.2, V.17, P.20, C.22 Chain B: C.2, C.22 Ligands: 8VH.19 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.17, A:P.20 8VH.19: 8 residues within 4Å: Chain B: C.2, V.17, P.20, C.22 Chain C: C.2, C.22 Ligands: 8VH.17, 8VH.21 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:V.17, B:P.20 8VH.21: 8 residues within 4Å: Chain C: C.2, V.17, P.20, C.22 Chain D: C.2, C.22 Ligands: 8VH.19, 8VH.23 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:V.17, C:P.20 8VH.23: 8 residues within 4Å: Chain D: C.2, V.17, P.20, C.22 Chain M: C.2, C.22 Ligands: 8VH.21, 8VH.41 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:V.17, D:P.20 8VH.25: 7 residues within 4Å: Chain E: C.2, V.17, P.20, C.22 Chain F: C.2, C.22 Ligands: 8VH.27 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:V.17, E:P.20 8VH.27: 8 residues within 4Å: Chain F: C.2, V.17, P.20, C.22 Chain G: C.2, C.22 Ligands: 8VH.25, 8VH.29 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:V.17, F:P.20 8VH.29: 8 residues within 4Å: Chain G: C.2, V.17, P.20, C.22 Chain H: C.2, C.22 Ligands: 8VH.27, 8VH.31 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:V.17, G:P.20 8VH.31: 8 residues within 4Å: Chain H: C.2, V.17, P.20, C.22 Chain N: C.2, C.22 Ligands: 8VH.29, 8VH.43 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:V.17, H:P.20 8VH.33: 7 residues within 4Å: Chain I: C.2, V.17, P.20, C.22 Chain J: C.2, C.22 Ligands: 8VH.35 2 PLIP interactions: 2 interactions with chain I Hydrophobic interactions: I:V.17, I:P.20 8VH.35: 8 residues within 4Å: Chain J: C.2, V.17, P.20, C.22 Chain K: C.2, C.22 Ligands: 8VH.33, 8VH.37 2 PLIP interactions: 2 interactions with chain J Hydrophobic interactions: J:V.17, J:P.20 8VH.37: 8 residues within 4Å: Chain K: C.2, V.17, P.20, C.22 Chain L: C.2, C.22 Ligands: 8VH.35, 8VH.39 2 PLIP interactions: 2 interactions with chain K Hydrophobic interactions: K:V.17, K:P.20 8VH.39: 8 residues within 4Å: Chain L: C.2, V.17, P.20, C.22 Chain O: C.2, C.22 Ligands: 8VH.37, 8VH.45 2 PLIP interactions: 2 interactions with chain L Hydrophobic interactions: L:V.17, L:P.20 8VH.41: 5 residues within 4Å: Chain M: C.2, V.17, P.20, C.22 Ligands: 8VH.23 2 PLIP interactions: 2 interactions with chain M Hydrophobic interactions: M:V.17, M:P.20 8VH.43: 5 residues within 4Å: Chain N: C.2, V.17, P.20, C.22 Ligands: 8VH.31 2 PLIP interactions: 2 interactions with chain N Hydrophobic interactions: N:V.17, N:P.20 8VH.45: 5 residues within 4Å: Chain O: C.2, V.17, P.20, C.22 Ligands: 8VH.39 2 PLIP interactions: 2 interactions with chain O Hydrophobic interactions: O:V.17, O:P.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, X. et al., Structure-based design of seed-competent proteomimetic macrocycles derived from 4R tauopathic folds. To Be Published

Release Date

2025-03-26

Peptides

Microtubule-associated protein tau: ABCDEFGHIJKLMNO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
G

C
M

D
S

E
C

F
I

G
O

H
U

I
E

J
K

K
Q

L
W

M
Y

N
a

O
c

Microtubule-associated protein tau

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