SMTL ID : 9b3x.1

Rat TRPV2 E724A/D725A bound to 2-APB

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x PEX: 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE(Non-covalent)

PEX.1: 13 residues within 4Å: Chain A: N.396, C.399, Y.400, Y.403, Y.447, L.448, Q.452, E.473, F.476, Y.514, Y.515, Y.675, W.677 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.677 Hydrogen bonds: A:N.396, A:Y.447, A:Y.514, A:Y.515 PEX.3: 13 residues within 4Å: Chain B: N.396, C.399, Y.400, Y.403, Y.447, L.448, Q.452, E.473, F.476, Y.514, Y.515, Y.675, W.677 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.677 Hydrogen bonds: B:N.396, B:Y.447, B:Y.514, B:Y.515 PEX.5: 13 residues within 4Å: Chain C: N.396, C.399, Y.400, Y.403, Y.447, L.448, Q.452, E.473, F.476, Y.514, Y.515, Y.675, W.677 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:W.677 Hydrogen bonds: C:N.396, C:Y.447, C:Y.514, C:Y.515 PEX.7: 13 residues within 4Å: Chain D: N.396, C.399, Y.400, Y.403, Y.447, L.448, Q.452, E.473, F.476, Y.514, Y.515, Y.675, W.677 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:W.677 Hydrogen bonds: D:N.396, D:Y.447, D:Y.514, D:Y.515

4 x FZ4: 2-aminoethyl diphenylborinate(Non-covalent)

FZ4.2: 6 residues within 4Å: Chain A: H.521, T.522, Y.525 Chain B: R.539, L.542, V.543 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:T.522, A:Y.525, B:R.539, B:R.539, B:V.543 Hydrogen bonds: A:H.521 FZ4.4: 6 residues within 4Å: Chain B: H.521, T.522, Y.525 Chain C: R.539, L.542, V.543 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: B:T.522, B:Y.525, C:R.539, C:R.539, C:V.543 Hydrogen bonds: B:H.521 FZ4.6: 6 residues within 4Å: Chain C: H.521, T.522, Y.525 Chain D: R.539, L.542, V.543 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain D Hydrophobic interactions: C:T.522, C:Y.525, D:R.539, D:R.539, D:V.543 Hydrogen bonds: C:H.521 FZ4.8: 6 residues within 4Å: Chain A: R.539, L.542, V.543 Chain D: H.521, T.522, Y.525 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain D Hydrophobic interactions: A:R.539, A:R.539, A:V.543, D:T.522, D:Y.525 Hydrogen bonds: D:H.521

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rocereta, J.A. et al., Structural insights into TRPV2 modulation by probenecid. Nat.Struct.Mol.Biol. (2025)

Release Date

2025-02-26

Peptides

Transient receptor potential cation channel subfamily V member 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 2

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