SMTL ID : 9b56.1

Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x 01: 4-aminobutanenitrile

01.1: 8 residues within 4Å: Chain A: C.85, R.90, L.119 Chain B: R.78, G.79 Chain C: T.347, C.348, F.349 6 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: C:T.347, C:C.348, B:R.78, A:R.90, A:R.90 Hydrophobic interactions: B:R.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kochanczyk, T. et al., Structural basis for transthiolation intermediates in the ubiquitin pathway. Nature (2024)

Release Date

2024-06-05

Peptides

Ubiquitin-conjugating enzyme E2 4: A
Ubiquitin: B
E3 ubiquitin-protein ligase pub2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Ubiquitin-conjugating enzyme E2 4

Ubiquitin

E3 ubiquitin-protein ligase pub2

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