SMTL ID : 9b68.1

GluA2 flip Q in complex with TARPgamma2 at pH8, class1, structure of NTD

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: G.232, H.234, N.256 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 6 residues within 4Å: Chain D: Y.143, R.206, G.232, Y.233, H.234, N.256 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 4 residues within 4Å: Chain B: Y.143, Q.144, G.232, N.256 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.143, B:Q.144 NAG-NAG-BMA.3: 5 residues within 4Å: Chain C: R.206, G.232, Y.233, H.234, N.256 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain C: E.354, N.359, N.370 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.354, C:N.359, C:N.370

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ivica, J. et al., Proton-triggered rearrangement of the AMPA receptor N-terminal domains impacts receptor kinetics and synaptic localization. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-07-31

Peptides

Isoform Flip of Glutamate receptor 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

C
B

D
D

Isoform Flip of Glutamate receptor 2

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