SMTL ID : 9ba5.1

Cross-linked Contactin 2 Ig1-Ig6

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: M.52, N.53, A.83 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.53 NAG.2: 3 residues within 4Å: Chain A: R.159, R.173, N.175 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.159, A:N.175 NAG.3: 4 residues within 4Å: Chain A: N.438, T.443, V.444, P.446 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.444 NAG.4: 2 residues within 4Å: Chain A: F.466, N.475 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.466 Hydrogen bonds: A:N.475 NAG.5: 3 residues within 4Å: Chain A: G.500, N.502, N.553 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.553 NAG.6: 2 residues within 4Å: Chain B: N.53, A.83 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.53 NAG.7: 2 residues within 4Å: Chain B: R.159, N.175 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.159, B:N.175 NAG.8: 3 residues within 4Å: Chain B: N.438, V.444, P.446 No protein-ligand interaction detected (PLIP) NAG.9: 2 residues within 4Å: Chain B: F.466, N.475 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.466 Hydrogen bonds: B:N.475 NAG.10: 3 residues within 4Å: Chain B: G.500, N.502, N.553 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:N.553

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, S. et al., Molecular mechanism of contactin 2 homophilic interaction. Structure (2024)

Release Date

2024-07-17

Peptides

Contactin-2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Contactin-2