SMTL ID : 9ba8.1

O-GlcNAcase (OGA) inhibitor complex for the Treatment of Alzheimer's Disease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.54 Å

Oligo State

homo-dimer

Ligands

2 x 01: N-[4-fluoro-5-({(2S,4S)-2-methyl-4-[(5-methyl-1,2,4-oxadiazol-3-yl)methoxy]piperidin-1-yl}methyl)-1,3-thiazol-2-yl]acetamide

01.1: 17 residues within 4Å: Chain A: G.15, F.16, Y.17, K.46, D.122, D.123, C.163, Y.167, T.198, V.202, V.203, W.226, N.228, A.231, D.233, Y.234, N.261 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:D.122, A:Y.167, A:T.198, A:V.202, A:V.203, A:W.226, A:N.228, A:A.231 Hydrogen bonds: A:K.46, A:D.122, A:D.122, A:N.228 Salt bridges: A:D.233 01.2: 17 residues within 4Å: Chain B: G.15, F.16, Y.17, K.46, D.122, D.123, C.163, Y.167, T.198, V.202, V.203, W.226, N.228, A.231, D.233, Y.234, N.261 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:Y.167, B:T.198, B:V.202, B:V.203, B:W.226, B:N.228, B:Y.234, B:Y.234 Hydrogen bonds: B:K.46, B:D.122, B:N.228 Salt bridges: B:D.233 pi-Stacking: B:Y.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kielbasa, W. et al., Discovery and clinical translation of ceperognastat, an O-GlcNAcase (OGA) inhibitor, for the treatment of Alzheimer's disease. Alzheimers Dement (N Y) (2024)

Release Date

2025-01-15

Peptides

Protein O-GlcNAcase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein O-GlcNAcase