SMTL ID : 9bcc.1 (1 other biounit)

Structure of KLHDC2 bound to SJ46418

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x 01: N-({2-[8-(2-methoxyethoxy)naphthalen-2-yl]-1,3-thiazol-4-yl}acetyl)glycine

01.1: 14 residues within 4Å: Chain A: Y.38, K.135, Y.151, D.166, W.179, A.207, A.208, R.224, R.229, S.257, W.258, W.309, L.330, L.331 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.151, A:W.258, A:W.309, A:L.330, A:L.331 Hydrogen bonds: A:S.257 Water bridges: A:K.135, A:R.224, A:R.229 Salt bridges: A:R.224, A:R.229

1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)

NCO.2: 3 residues within 4Å: Chain A: D.74, E.121, R.122 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.74, A:D.74, A:D.74, A:R.122 Water bridges: A:D.74, A:D.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scott, D.C. et al., Principles of isoform-specific targeted protein degradation engaging the C-degron E3 KLHDC2. To Be Published

Release Date

2024-11-06

Peptides

Kelch domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Kelch domain-containing protein 2

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