SMTL ID : 9bcg.1

Myeloid cell leukemia-1 (Mcl-1) complexed with compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 18 residues within 4Å: Chain A: N.13, D.15, K.16, E.45, W.63, A.64, D.66, R.67, E.112, N.151, E.154, P.155, Y.156, F.157, W.230, M.330, W.340, R.344 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:W.63, A:D.66, A:R.67, A:R.67, A:E.154, A:Y.156, A:R.344 Water bridges: A:E.45, A:R.344

1 x 01: 7-[(4R,5S,6P)-7-chloro-10-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-4-methyl-1-oxo-6-(1,3,5-trimethyl-1H-pyrazol-4-yl)-3,4-dihydropyrazino[1,2-a]indol-2(1H)-yl]-4,5-dimethoxy-1-methyl-1H-indole-2-carboxylic acid

01.2: 24 residues within 4Å: Chain A: H.420, A.423, F.424, M.427, L.431, L.442, V.445, M.446, V.449, F.450, S.451, D.452, G.453, V.454, N.456, G.458, R.459, T.462, L.463, F.466, G.467, V.470, L.486, I.490 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:A.423, A:F.424, A:L.431, A:V.445, A:V.449, A:F.450, A:T.462, A:L.463, A:F.466, A:F.466, A:I.490 Hydrogen bonds: A:V.454, A:N.456, A:R.459, A:R.459, A:R.459 Water bridges: A:T.462 pi-Stacking: A:F.466 pi-Cation interactions: A:R.459 Halogen bonds: A:A.423

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tarr, J.C. et al., Discovery of a Myeloid Cell Leukemia 1 (Mcl-1) Inhibitor That Demonstrates Potent In Vivo Activities in Mouse Models of Hematological and Solid Tumors. J.Med.Chem. (2024)

Release Date

2024-08-07

Peptides

Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose/maltodextrin-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1