SMTL ID : 9bcv.1

Cyclase domain of GC-A bound to ANP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-8-mer

Ligands

2 x G2P: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)(Covalent)

G2P.1: 13 residues within 4Å: Chain A: D.849, I.850, V.851, G.852, T.854, R.940 Chain B: F.847, M.896, G.964, V.967, N.968, S.971 Ligands: MG.3 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:E.889, B:G.964, B:G.964, B:N.968, B:S.971, A:G.852, A:T.854 Salt bridges: A:R.940 G2P.2: 10 residues within 4Å: Chain A: F.847, E.889, G.964, N.968 Chain B: I.850, V.851, T.854, D.893, R.940 Ligands: MG.4 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:F.853, B:T.854, B:T.854, A:G.964, A:G.964 Salt bridges: B:R.940, A:E.889

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: I.850, D.893 Ligands: G2P.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:I.850 MG.4: 3 residues within 4Å: Chain B: I.850, D.893 Ligands: G2P.2 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.893, B:D.893

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, S. et al., Architecture and activation of single-pass transmembrane receptor guanylyl cyclase. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-11-27

Peptides

Atrial natriuretic peptide receptor 1: AB
Fab fragment: CDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
H

E
J

F
I

G
C

H
D

I
E

J
F

Atrial natriuretic peptide receptor 1

Fab fragment

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