SMTL ID : 9bcz.1

Chicken 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase zeta-1 (PLCZ1) in complex with calcium and phosphorylated threonine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 1 residues within 4Å: Chain A: L.221 No protein-ligand interaction detected (PLIP) PEG.2: 5 residues within 4Å: Chain A: E.547, Q.549, A.550, K.551, R.552 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.547, A:K.551, A:K.551, A:R.552 Water bridges: A:R.552 PEG.3: 4 residues within 4Å: Chain A: F.22, F.45, K.46, H.55 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.46

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4: 8 residues within 4Å: Chain A: R.552, K.553, S.554, S.555, E.568, T.569, F.570, S.571 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.569, A:S.571 Salt bridges: A:R.552, A:E.568

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 5 residues within 4Å: Chain A: N.173, E.202, D.204, E.251, T.331 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.202, A:D.204, A:D.204, A:E.251

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 3 residues within 4Å: Chain A: D.186, L.187, I.225 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.186, A:L.187

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 5 residues within 4Å: Chain A: R.440, A.441, G.442, S.443, S.444 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: N.445, P.469 Ligand excluded by PLIP

5 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.9: 1 residues within 4Å: Chain A: K.610 No protein-ligand interaction detected (PLIP) UNX.10: 4 residues within 4Å: Chain A: S.529, K.530, S.531, K.533 No protein-ligand interaction detected (PLIP) UNX.11: 1 residues within 4Å: Chain A: Y.633 No protein-ligand interaction detected (PLIP) UNX.12: 4 residues within 4Å: Chain A: H.172, E.202, R.433, Y.435 No protein-ligand interaction detected (PLIP) UNX.13: 1 residues within 4Å: Chain A: S.526 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, M.M. et al., Chicken 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase zeta-1 (PLCZ1) in complex with calcium and phosphorylated threonine. To be published

Release Date

2024-05-15

Peptides

1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase zeta-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase zeta-1