SMTL ID : 9bdf.1

Influenza A virus Hemagglutinin H3/Darwin/6/2021 in complex with Fab ADI-85666

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 9 residues within 4Å: Chain A: N.165, T.167, I.242, L.244 Chain F: S.219, P.221, R.222, D.225 Ligands: NAG-NAG.2 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:R.222 NAG-NAG-BMA-MAN.4: 6 residues within 4Å: Chain F: N.165, T.167, I.242 Chain G: S.219, P.221, R.222 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:R.222 NAG-NAG-BMA-MAN.9: 8 residues within 4Å: Chain A: S.219, P.221, R.222, D.225 Chain G: N.165, T.167, L.244 Ligands: NAG-NAG.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.222 Hydrophobic interactions: A:R.222

5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 8 residues within 4Å: Chain A: A.163, Q.164, N.165, R.201, N.246 Chain F: I.217, G.218 Ligands: NAG-NAG-BMA-MAN.1 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 7 residues within 4Å: Chain F: A.163, N.165, R.201, N.246, S.247, T.248 Chain G: I.217 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 7 residues within 4Å: Chain G: N.285, N.296, V.297, N.298, R.299, Y.308, E.398 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:R.299, G:R.299 NAG-NAG.7: 2 residues within 4Å: Chain G: N.63, R.92 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 9 residues within 4Å: Chain A: I.217 Chain G: A.163, Q.164, N.165, R.201, N.246, S.247, T.248 Ligands: NAG-NAG-BMA-MAN.9 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 3 residues within 4Å: Chain A: N.285, V.297, E.398 No protein-ligand interaction detected (PLIP)

16 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 4 residues within 4Å: Chain A: N.22 Chain C: G.26, G.27, F.28 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain A: N.38, T.40, T.318, L.381 Ligand excluded by PLIP NAG.12: 1 residues within 4Å: Chain A: N.483 Ligand excluded by PLIP NAG.13: 2 residues within 4Å: Chain A: Q.132, N.133 Ligand excluded by PLIP NAG.14: 2 residues within 4Å: Chain A: N.63, N.94 Ligand excluded by PLIP NAG.15: 1 residues within 4Å: Chain F: N.483 Ligand excluded by PLIP NAG.16: 4 residues within 4Å: Chain F: N.38, T.40, T.318, L.381 Ligand excluded by PLIP NAG.17: 4 residues within 4Å: Chain E: G.26, G.27, F.28 Chain F: N.22 Ligand excluded by PLIP NAG.18: 2 residues within 4Å: Chain F: Q.132, N.133 Ligand excluded by PLIP NAG.19: 1 residues within 4Å: Chain F: N.63 Ligand excluded by PLIP NAG.20: 4 residues within 4Å: Chain F: N.45, N.285, V.297, N.298 Ligand excluded by PLIP NAG.21: 4 residues within 4Å: Chain B: G.26, G.27, F.28 Chain G: N.22 Ligand excluded by PLIP NAG.22: 4 residues within 4Å: Chain G: N.38, T.40, T.318, L.381 Ligand excluded by PLIP NAG.23: 1 residues within 4Å: Chain G: N.483 Ligand excluded by PLIP NAG.24: 2 residues within 4Å: Chain G: Q.132, N.133 Ligand excluded by PLIP NAG.25: 1 residues within 4Å: Chain G: N.126 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maurer, D. et al., Influenza A virus Hemagglutinin H3/Darwin/6/2021 in complex with Fab ADI-85666. To be Published

Release Date

2024-11-13

Peptides

Hemagglutinin: AFG
ADI-85666 Fab heavy chain: BCE
ADI-85666 Fab light chain: DHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
G

G
H

B
B

C
C

E
E

D
D

H
I

I
J

Hemagglutinin

ADI-85666 Fab heavy chain

ADI-85666 Fab light chain

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