SMTL ID : 9bdu.1

NF-kappaB RelA homo-dimer bound to AT-centric kappaB DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: T.61, K.62, D.63, R.67, D.134, Y.135, D.136 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.61, A:T.61, A:K.62, A:D.63, A:D.134, A:D.136 Salt bridges: A:R.67 SO4.2: 7 residues within 4Å: Chain B: T.61, K.62, D.63, R.67, D.134, Y.135, D.136 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.61, B:K.62, B:D.63, B:D.63, B:D.134, B:D.136 Salt bridges: B:R.67 SO4.3: 9 residues within 4Å: Chain B: P.172, N.173, T.174, A.175, L.177, K.201, V.202, Q.203, R.257 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.173, B:A.175, B:Q.203 Salt bridges: B:R.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, T. et al., Transient interactions modulate the affinity of NF-kappa B transcription factors for DNA. Proc.Natl.Acad.Sci.USA (2024)

Release Date

2024-04-24

Peptides

Transcription factor p65: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transcription factor p65

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