SMTL ID : 9bdv.1

NF-kappaB RelA homo-dimer bound to TA-centric kappaB DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: T.61, K.62, D.63, R.67, D.134, Y.135, D.136 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.62, A:D.63, A:D.136 Water bridges: A:R.67, A:H.69, A:D.136 Salt bridges: A:R.67 SO4.2: 4 residues within 4Å: Chain A: R.181, V.182 Chain B: E.194, F.196 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Water bridges: B:E.194, A:V.182 Salt bridges: A:R.181 SO4.3: 7 residues within 4Å: Chain B: T.61, K.62, D.63, R.67, D.134, Y.135, D.136 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.61, B:K.62, B:D.63, B:D.136 Water bridges: B:R.67 Salt bridges: B:R.67 SO4.4: 7 residues within 4Å: Chain B: Y.19, H.71, C.103, L.137, N.138, D.168 Chain C: T.10 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.19, B:D.168, B:D.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Biswas, T. et al., Transient interactions modulate affinity of NF-kappaB transcription factors for DNA. To Be Published

Release Date

2024-04-24

Peptides

Transcription factor p65: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transcription factor p65

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