SMTL ID : 9be3.2 (1 other biounit)

The pre-condensation state of the dimodular NRPS protein LgrA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: D.396, G.397, Y.439, G.463, G.482, I.488, M.489 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.439

1 x JQG: (2~{R})-~{N}-[3-[2-[[(2~{S})-2-formamido-3-methyl-butanoyl]amino]ethylamino]-3-oxidanylidene-propyl]-3,3-dimethyl-2-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-butanamide(Covalent)

JQG.2: 18 residues within 4Å: Chain A: S.729, I.730, Y.748, V.810, Y.812, H.910, D.914, G.915, T.1015, Y.1017, V.1043, T.1044, D.1045, V.1060, L.1090, M.1122, Q.1123, E.1149 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.810, A:L.1090 Hydrogen bonds: A:S.729, A:S.729, A:G.915, A:D.1045, A:D.1045, A:M.1122 Water bridges: A:Y.1017, A:G.1124

3 x MN: MANGANESE (II) ION(Non-functional Binders)(Non-covalent)

MN.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MN.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MN.5: 3 residues within 4Å: Chain A: E.364, H.366, L.538 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pistofidis, A. et al., To be determined and updated. To Be Published

Release Date

2024-11-20

Peptides

Linear gramicidin synthase subunit A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Linear gramicidin synthase subunit A

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