SMTL ID : 9be4.1 (1 other biounit)

The post-condensation state of the dimodular NRPS protein LgrA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: P.217, D.218, T.230, K.232, Q.233 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.218, A:D.218, A:T.230 GOL.2: 5 residues within 4Å: Chain A: D.396, Y.439, G.482, I.488, M.489 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.396

1 x 01: N-formyl-L-valyl-N-[2-({N-[(2S)-2-hydroxy-4-{[(S)-hydroxy(oxo)-lambda~5~-phosphanyl]oxy}-3,3-dimethylbutanoyl]-beta-alanyl}amino)ethyl]glycinamide

01.3: 21 residues within 4Å: Chain A: X.729, R.794, I.798, Y.808, V.810, Y.812, H.910, D.914, G.915, V.1060, T.1062, F.1097, L.1101, R.1108, M.1121, H.1136, K.1143, F.1144, E.1149, D.1761, S.1762 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.794, A:V.810, A:F.1097, A:L.1101 Hydrogen bonds: A:Y.808, A:Y.808, A:G.915, A:S.1762 Water bridges: A:Y.808, A:H.1113 Salt bridges: A:R.1108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pistofidis, A. et al., Structures and mechanism of condensation in nonribosomal peptide synthesis. Nature (2024)

Release Date

2024-11-20

Peptides

Linear gramicidin synthase subunit A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Linear gramicidin synthase subunit A

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