SMTL ID : 9bgl.1

Complex of Zinc Finger Antiviral Protein RBD and KHNYN CTD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

hetero-1-1-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.75, C.80, C.84, H.88 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.75, A:C.80, A:C.84, A:H.88 ZN.2: 4 residues within 4Å: Chain A: C.90, C.98, C.108, H.112 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.90, A:C.98, A:C.108, A:H.112 ZN.3: 4 residues within 4Å: Chain A: C.152, C.164, C.170, H.174 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.152, A:C.164, A:C.170, A:H.174 ZN.4: 4 residues within 4Å: Chain A: C.176, C.184, C.189, H.193 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.176, A:C.184, A:C.189, A:H.193 ZN.5: 3 residues within 4Å: Chain A: H.19, E.31 Chain B: H.28 5 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:H.28, A:H.19, A:E.31, A:E.31, H2O.5

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 7 residues within 4Å: Chain A: K.91, L.95, F.147, M.148, P.149, H.207, L.209 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.91, A:K.91 EDO.7: 7 residues within 4Å: Chain A: R.77, K.78, Y.79, C.80, R.82, K.109, Y.110 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.78, A:C.80, A:R.82, A:R.82 EDO.8: 6 residues within 4Å: Chain A: E.31, I.32, A.33 Chain B: Q.26, K.29, F.55 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.29, B:F.55, A:A.33 Water bridges: B:Q.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bohn, J.A. et al., Functional anatomy of zinc finger antiviral protein complexes. Nat Commun (2024)

Release Date

2025-01-22

Peptides

Zinc finger CCCH-type antiviral protein 1: A
Protein KHNYN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Zinc finger CCCH-type antiviral protein 1

Protein KHNYN

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