SMTL ID : 9bi8.1

Crystal structure of inhibitor GNE-6893 bound to HPK1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x 01: (3R,4S)-4-methyloxolan-3-yl [(6P)-8-amino-7-fluoro-6-(8-methyl-2,3-dihydro-1H-pyrido[2,3-b][1,4]oxazin-7-yl)isoquinolin-3-yl]carbamate

01.1: 21 residues within 4Å: Chain A: Q.36, L.38, T.42, Y.43, V.46, A.59, K.61, V.90, M.106, E.107, F.108, C.109, G.110, A.111, G.112, D.116, N.157, L.159, A.169, F.171, Q.176 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.38, A:Y.43, A:Y.43, A:Y.43, A:Y.43, A:A.59, A:D.116, A:L.159 Hydrogen bonds: A:K.61, A:E.107, A:C.109, A:C.109, A:N.157 Water bridges: A:Q.176 01.3: 20 residues within 4Å: Chain B: Q.36, L.38, T.42, Y.43, V.46, A.59, K.61, V.90, M.106, E.107, F.108, C.109, G.110, A.111, G.112, D.116, N.157, L.159, A.169, F.171 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:Y.43, B:Y.43, B:Y.43, B:Y.43, B:A.59, B:L.159, B:L.159 Hydrogen bonds: B:K.61, B:E.107, B:C.109, B:C.109, B:N.157 Water bridges: B:Q.176

1 x DMS: DIMETHYL SULFOXIDE

DMS.2: 4 residues within 4Å: Chain B: D.232, V.233, H.234, P.235 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION

NA.4: 6 residues within 4Å: Chain B: I.221, E.225, P.229, R.251, L.252, K.253 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.225, B:K.253 Water bridges: B:E.225, B:R.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tellis, J.C. et al., Discovery of GNE-6893, a Potent, Selective, Orally Bioavailable Small Molecule Inhibitor of HPK1. Acs Med.Chem.Lett. (2024)

Release Date

2024-10-02

Peptides

Mitogen-activated protein kinase kinase kinase kinase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Mitogen-activated protein kinase kinase kinase kinase 1

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