SMTL ID : 9bj4.1

Structure of the SARS-CoV-2 S 6P trimer complex with the human neutralizing antibody Fab fragment, C952

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: G.339, N.343 Chain D: R.78, E.84 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 6 residues within 4Å: Chain B: F.338, G.339, F.342, N.343, V.367 Chain F: R.78 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rubio, A.A. et al., Bispecific antibodies targeting the N-terminal and receptor binding domains potently neutralize SARS-CoV-2 variants of concern. Sci Transl Med (2025)

Release Date

2025-03-05

Peptides

Spike glycoprotein: ABC
C952 Heavy Chain: DFH
C952 Light Chain: EGI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
H

F
D

H
F

E
L

G
E

I
G

Spike glycoprotein

C952 Heavy Chain

C952 Light Chain

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