SMTL ID : 9bky.3 (2 other biounits)

Crystal structure of a C2 domain from Trichomonas vaginalis (sulfate bound)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.31, S.53, Y.54, N.55 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.54, A:N.55, A:N.55 Salt bridges: A:K.31 SO4.2: 4 residues within 4Å: Chain A: H.7, H.8, M.9, Q.132 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.8, A:M.9, A:Q.132 Salt bridges: A:H.7 SO4.3: 5 residues within 4Å: Chain A: L.40, G.41, N.42, T.67, N.68 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.42, A:N.42, A:E.43, A:T.67, A:N.68 Water bridges: A:T.67 SO4.4: 4 residues within 4Å: Chain A: G.84, S.85, N.86 Ligands: SO4.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.86 Water bridges: A:N.86, A:N.86 SO4.5: 4 residues within 4Å: Chain A: M.9, T.131, N.133, M.134 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.133 SO4.6: 2 residues within 4Å: Chain A: H.4, H.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.5 Salt bridges: A:H.4, A:H.5 SO4.7: 2 residues within 4Å: Chain A: Y.109, M.110 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.110 SO4.8: 5 residues within 4Å: Chain A: Y.35, Q.37, K.44, K.46 Ligands: SO4.4 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.37 Water bridges: A:Y.35, A:Y.35, A:N.86, A:N.86 Salt bridges: A:K.44, A:K.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Crystal structure of a C2 domain from Trichomonas vaginalis (sulfate bound). To be published

Release Date

2024-05-08

Peptides

XYPPX repeat family protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

XYPPX repeat family protein

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