SMTL ID : 9boe.1

Crystal Structure of E166V SARS-CoV-2 Main Protease in Complex with GC376

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

2 x UED: N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide(Covalent)

UED.1: 19 residues within 4Å: Chain A: H.41, M.49, Y.54, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, V.166, H.172, V.186, D.187, R.188, Q.189 Chain B: S.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:H.41, A:M.165, A:V.166, A:Q.189 Hydrogen bonds: A:F.140, A:G.143, A:S.144, A:C.145, A:H.164, A:V.166, A:Q.189 UED.2: 18 residues within 4Å: Chain A: S.1 Chain B: H.41, M.49, Y.54, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, V.166, H.172, D.187, R.188, Q.189 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:H.41, B:V.166, B:D.187 Hydrogen bonds: B:G.143, B:S.144, B:C.145, B:H.164, B:V.166, B:Q.189, B:Q.189, A:S.1, A:S.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kenneson, J.R. et al., Exploring Possible Drug-Resistant Variants of SARS-CoV-2 Main Protease (Mpro) with Noncovalent Preclinical Candidate, Mpro61. Acs Bio Med Chem Au (2025)

Release Date

2025-02-12

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3C-like proteinase nsp5

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