SMTL ID : 9boi.1

Cryo-EM structure of human Spns1 in complex with LPC (18:1)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x 42H: (4R,7R,18Z)-4,7-dihydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphaheptacos-18-en-1-aminium 4-oxide(Non-covalent)

42H.1: 9 residues within 4Å: Chain A: V.766, G.769, L.770, Y.772, I.773, S.891, G.895, L.896, C.899 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.770

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, H. et al., Molecular basis of Spns1-mediated lysophospholipid transport from the lysosome. Proc.Natl.Acad.Sci.USA (2025)

Release Date

2025-01-01

Peptides

mVenus,Maltose/maltodextrin-binding periplasmic protein,Protein spinster homolog 1,Designed ankyrin repeat protein (DARPin): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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mVenus,Maltose/maltodextrin-binding periplasmic protein,Protein spinster homolog 1,Designed ankyrin repeat protein (DARPin)