SMTL ID : 9bp0.1

Cryo-EM structure of human heteromeric Glycine Receptor alpha3S346E-beta with glycine

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: P.35, P.36, N.38 No protein-ligand interaction detected (PLIP) NAG.3: 3 residues within 4Å: Chain B: P.36, N.38, I.167 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:N.38 NAG.5: 4 residues within 4Å: Chain C: P.35, P.36, N.38, I.167 No protein-ligand interaction detected (PLIP) NAG.6: 4 residues within 4Å: Chain D: N.31, P.36, V.37, N.38 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.38 NAG.8: 3 residues within 4Å: Chain E: I.190, N.218, T.220 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:I.190

4 x GLY: GLYCINE(Non-covalent)

GLY.2: 8 residues within 4Å: Chain A: I.62, F.63, L.64, N.115, S.129, I.130, R.131 Chain E: F.180 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.62, A:L.64, A:I.130 GLY.4: 8 residues within 4Å: Chain B: F.159, Y.202, T.204, F.207 Chain C: F.63, R.65, L.117, S.129 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:S.129, B:T.204 Salt bridges: C:R.65 GLY.7: 8 residues within 4Å: Chain D: L.90, I.93, L.117, L.118, R.119, V.126, L.127, Y.128 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:L.117, D:R.119, D:L.127 GLY.9: 7 residues within 4Å: Chain D: F.159, T.204, F.207 Chain E: F.82, R.84, L.138, S.150 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:S.150, E:S.150, D:T.204 Salt bridges: E:R.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, X. et al., Cryo-EM structure of human heteromeric Glycine Receptor alpha3S346E-beta with glycine. To Be Published

Release Date

2025-05-14

Peptides

Glycine receptor subunit alpha-3: ABCD
Glycine receptor subunit beta,Green fluorescent protein: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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Glycine receptor subunit alpha-3

Glycine receptor subunit beta,Green fluorescent protein

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