SMTL ID : 9bp8.1

Crystal structure of BRAF kinase domain with PF-07799933

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x 01: N-{(1R,2P)-6-chloro-5-[(5-chloro-3-methyl-4-oxo-3,4-dihydroquinazolin-6-yl)amino]-4-fluorocyclohexa-2,3,5-trien-1-yl}-3-fluoroazetidine-1-sulfonamide

01.1: 21 residues within 4Å: Chain A: I.34, V.42, A.52, K.54, L.76, T.79, L.85, F.87, I.98, T.100, Q.101, W.102, C.103, G.105, N.152, F.154, G.164, D.165, F.166, G.167 Ligands: DMS.5 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:A.52, A:K.54, A:L.85, A:I.98, A:T.100, A:F.154 Hydrogen bonds: A:C.103, A:D.165, A:F.166, A:G.167 Water bridges: A:N.152, A:D.165, A:D.165 pi-Stacking: A:W.102 pi-Cation interactions: A:K.54 Halogen bonds: A:T.79, A:N.152

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: G.37, S.38, K.149, G.186 Ligands: DMS.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.38, A:K.149 Water bridges: A:S.38 DMS.3: 5 residues within 4Å: Chain A: P.193, E.194, R.197, D.200, G.241 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:D.200 DMS.4: 10 residues within 4Å: Chain A: G.37, S.38, F.39, G.40, K.54, K.149, D.165, K.172 Ligands: DMS.2, DMS.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.149 Water bridges: A:S.38, A:S.38, A:N.152 Salt bridges: A:D.165 DMS.5: 5 residues within 4Å: Chain A: G.35, V.42, N.152 Ligands: 01.1, DMS.4 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.152

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 2 residues within 4Å: Chain A: W.21, R.77 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mou, T.-C., Crystal structure of BRAF kinase domain with PF-07799933. To Be Published

Release Date

2025-05-14

Peptides

Serine/threonine-protein kinase B-raf: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase B-raf

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