SMTL ID : 9br4.2 (1 other biounit)

Crystal structure of p53 Y220C mutant in complex with PC-9859

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x 01: 2-methyl-2-{5-[(3-{4-[(1-methylpiperidin-4-yl)amino]-1-(2,2,2-trifluoroethyl)-1H-indol-2-yl}prop-2-yn-1-yl)amino]pyridin-2-yl}propanenitrile

01.1: 16 residues within 4Å: Chain A: L.54, V.56, D.57, T.59, P.60, P.61, P.62, V.66, C.129, E.130, P.131, P.132, D.137, C.138, T.139, L.166 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.56, A:V.56, A:P.60, A:P.131, A:P.132 Hydrogen bonds: A:T.59, A:C.129 Water bridges: A:T.59, A:C.129

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.85, H.88, C.147, C.151 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.85, A:H.88, A:C.147, A:C.151

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: H.24, S.25, G.26, R.191 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vu, B.T. et al., Discovery of Rezatapopt (PC14586), a First-in-Class, Small-Molecule Reactivator of p53 Y220C Mutant in Development. Acs Med.Chem.Lett. (2024)

Release Date

2024-12-18

Peptides

Cellular tumor antigen p53: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cellular tumor antigen p53

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