SMTL ID : 9br7.2 (1 other biounit)

Crystal structure of human succinyl-CoA:glutarate-CoA transferase (SUGCT) in complex with Losartan carboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

homo-dimer

Ligands

2 x 01: losartan carboxylic acid

01.1: 22 residues within 4Å: Chain A: V.26, L.27, T.55, W.58, Y.69, S.72, V.73, G.148, Y.149, D.150, V.175, A.176, D.179 Chain B: S.219, H.220, I.242, Y.245, A.259, G.260, P.322 Ligands: NH4.2, SO4.3 17 PLIP interactions: 10 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:L.27, A:L.27, A:W.58, A:W.58, A:Y.69, A:Y.149, A:Y.149, B:H.220, B:Y.245, B:P.322 Hydrogen bonds: A:D.150, A:A.176, B:S.219, B:S.219, B:H.220 pi-Stacking: A:Y.69 pi-Cation interactions: B:H.220 01.5: 21 residues within 4Å: Chain A: S.219, H.220, I.242, Y.245, G.260, P.322 Chain B: V.26, L.27, T.55, W.58, Y.69, S.72, V.73, G.148, Y.149, D.150, V.175, A.176, D.179 Ligands: NH4.6, SO4.7 12 PLIP interactions: 8 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:W.58, B:W.58, B:Y.69, A:H.220, A:I.242, A:Y.245 Hydrogen bonds: B:D.150, B:A.176 Water bridges: B:Y.69 pi-Stacking: B:Y.69, B:Y.149 pi-Cation interactions: A:H.220

2 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.2: 8 residues within 4Å: Chain A: R.25, V.26, L.27, A.28, N.106, D.179 Ligands: 01.1, SO4.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.27, A:A.28, A:D.179 NH4.6: 7 residues within 4Å: Chain B: R.25, V.26, L.27, A.28, D.179 Ligands: 01.5, SO4.7 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.27, B:A.28, B:D.179

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 9 residues within 4Å: Chain A: A.28, N.106, I.134, T.135, G.148, D.179, L.210 Ligands: 01.1, NH4.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.106, A:I.134, A:D.179 SO4.4: 4 residues within 4Å: Chain A: R.363, K.368, M.369, S.370 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.369, A:S.370 Salt bridges: A:K.368 SO4.7: 9 residues within 4Å: Chain B: A.28, N.106, I.134, T.135, G.148, D.179, L.210 Ligands: 01.5, NH4.6 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.106, B:G.148, B:G.148 SO4.8: 4 residues within 4Å: Chain B: R.363, K.368, M.369, S.370 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:M.369, B:S.370 Salt bridges: B:K.368

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, R. et al., Characterization, Structure, and Inhibition of the Human Succinyl-CoA:glutarate-CoA Transferase, a Putative Genetic Modifier of Glutaric Aciduria Type 1. Acs Chem.Biol. (2024)

Release Date

2024-08-07

Peptides

Succinate--hydroxymethylglutarate CoA-transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Succinate--hydroxymethylglutarate CoA-transferase

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