SMTL ID : 9brx.1

SARS-CoV-2 Papain-like Protease (PLpro) with Fragment 10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 01: (4R)-N-(2,4-dimethylphenyl)-7-methyl[1,2,4]triazolo[4,3-a]pyrimidin-5-amine

01.1: 11 residues within 4Å: Chain A: V.189, C.191, C.194, G.195, Q.196, Q.197, T.199, I.224, P.225, C.226, T.227 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.189, A:Q.197 Hydrogen bonds: A:T.227, A:T.227 Water bridges: A:K.234, A:K.234, A:K.234

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.191, C.194, C.226, C.228 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.191, A:C.194, A:C.226, A:C.228

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: W.108, N.111, N.112, C.113, G.273, H.274 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:C.113, A:G.273 Water bridges: A:Y.114, A:G.273, A:G.273, A:H.274, A:H.274 Salt bridges: A:H.274

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taylor, A.J. et al., Fragment-Based Screen of SARS-CoV-2 Papain-like Protease (PL pro ). Acs Med.Chem.Lett. (2024)

Release Date

2024-07-31

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AA

Papain-like protease nsp3